Skip to content

@EU-ECDC European Centre for Disease Prevention and Control (ECDC)

All

    Repositories list

    33 repositories

    • Respiratory_viruses_weekly_data

      Public
      European Union Public License 1.2
      •4•24•4•0•Updated Sep 18, 2026Sep 18, 2026

    • ECDC-Mathematical-Models

      Public
      R
      •
      European Union Public License 1.2
      •1•2•0•0•Updated Sep 14, 2026Sep 14, 2026

    • ecdc_nube

      Public
      NUBE is an Ultrafast Bioinformatics calculation Engine. It is the ECDC genomic analysis calculation system.
      Python
      •
      European Union Public License 1.2
      •0•2•0•3•Updated Sep 14, 2026Sep 14, 2026

    • Medical-Redactor

      Public
      Medical Redactor is an advanced, privacy-first, and fully portable Python application designed for healthcare professionals. It automates the ingestion, structu…
      Python
      •
      European Union Public License 1.2
      •0•0•0•0•Updated Aug 27, 2026Aug 27, 2026

    • COVID19SocialPatterns

      Public
      R
      •
      European Union Public License 1.2
      •1•0•0•1•Updated Jul 13, 2026Jul 13, 2026

    • HyFive

      Public
      Hand Hygiene monitoring application
      C#
      •
      MIT License
      •0•0•0•0•Updated May 27, 2026May 27, 2026

    • episomer

      Public
      ECDC Early warning tool using social media data.
      machine-learningrtwitter
      machine-learningrtwittersparklucenesignal-detectionearly-warning-systemsepidemic-surveillance
      R
      •
      European Union Public License 1.2
      •13•71•0•0•Updated May 8, 2026May 8, 2026

    • EHR-BSI

      Public
      R
      •
      European Union Public License 1.2
      •0•2•0•0•Updated Apr 29, 2026Apr 29, 2026

    • epc_cli

      Public
      Command-line interface for automating and managing epidemiological and WGS data submissions to the EpiPulse Cases platform, with support for configuration, vali…
      Python
      •
      European Union Public License 1.2
      •0•6•1•0•Updated Feb 11, 2026Feb 11, 2026

    • Epiphany

      Public
      HTML
      •
      European Union Public License 1.2
      •0•1•0•0•Updated Feb 4, 2026Feb 4, 2026

    • HALT4prev2inc

      Public
      European Union Public License 1.2
      •0•0•0•0•Updated Dec 16, 2025Dec 16, 2025

    • ecdc_signalbox

      Public
      Binding between BN and ecdc_nube
      European Union Public License 1.2
      •0•0•0•0•Updated Nov 14, 2025Nov 14, 2025

    • hivModelling

      Public
      R
      •
      European Union Public License 1.2
      •2•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • hivEstInfTime

      Public
      R
      •
      European Union Public License 1.2
      •1•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • hivPlatform

      Public
      JavaScript
      •
      European Union Public License 1.2
      •1•0•0•0•Updated Sep 12, 2025Sep 12, 2025

    • hivEstimatesAccuracy

      Public
      R
      •
      European Union Public License 1.2
      •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • hivEstimatesAccuracyUI

      Public
      R
      •
      European Union Public License 1.2
      •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • hivPlatform_deprecated

      Public
      R
      •
      European Union Public License 1.2
      •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • hivEstimatesAccuracy2

      Public
      R
      •
      European Union Public License 1.2
      •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • EpiReport

      Public
      ECDC in collaboration with Epiconcept developed an R package to create epidemiological reports
      HTML
      •
      European Union Public License 1.2
      •4•15•0•1•Updated Jul 24, 2025Jul 24, 2025

    • PooledPrevalence

      Public
      A set of tools to help design a laboratory based prevalence study harnessing the pooling of laboratory samples to increase resource efficiency.
      R
      •
      European Union Public License 1.2
      •2•4•5•0•Updated Jul 24, 2025Jul 24, 2025

    • EcdcSupportSnippets

      Public
      Development of various support R code snippets and packages for use for analysis and modelling purposes.
      R
      •
      European Union Public License 1.2
      •2•8•9•1•Updated Jul 24, 2025Jul 24, 2025

    • EcdcColors

      Public
      Development of an R package for using colour palettes following March 2018 ECDC guidelines for presentation of surveillance data
      R
      •
      European Union Public License 1.2
      •5•8•0•0•Updated Jul 24, 2025Jul 24, 2025

    • IPDForecasting

      Public
      Forecasts of invasive pneumococcal disease (IPD). Dynamic regression model based on demography, vaccination coverage, childcare patterns and incidence of IPD an…
      R
      •
      European Union Public License 1.2
      •0•1•1•0•Updated Jul 24, 2025Jul 24, 2025

    • HerpesZosterModel

      Public
      Development of an R package for Herpes Zoster modeling
      R
      •
      European Union Public License 1.2
      •1•0•1•0•Updated Jul 24, 2025Jul 24, 2025

    • MixtureOfExperts

      Public
      A flexible mixture of experts framework, calibrated with expectation maximisation. Options for mixtures of Gaussians, regression models etc.
      R
      •
      European Union Public License 1.2
      •1•1•0•0•Updated Jul 24, 2025Jul 24, 2025

    • EpiSignalDetection

      Public
      ECDC in collaboration with Epiconcept developed an R package for monitoring infectious disease surveillance data
      HTML
      •
      European Union Public License 1.2
      •6•20•1•1•Updated Jul 24, 2025Jul 24, 2025

    • MonthlyMeaslesRubella

      Public
      Development of an R package for production of the monthly measles and rubella surveillance report
      European Union Public License 1.2
      •0•1•0•0•Updated Jul 24, 2025Jul 24, 2025

    • ECDC-AI-Outlook-Extender

      Public
      ECDC AI Outlook Extender
      C#
      •
      European Union Public License 1.2
      •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • BackendCovidApp

      Public
      The backend to the COVID-19 RShiny app (github.com/EU-ECDC/RShinyCovidApp)
      R
      •
      European Union Public License 1.2
      •2•1•0•1•Updated Jul 18, 2025Jul 18, 2025
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.