Repositories list

• HPC-python

  Public
  An introduction course to using Python in an HPC environment

  pythonswedencourse+ 5hpcuppmaxlunarcnaisshpc2n

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •2•7•0•0•Updated Dec 22, 2025Dec 22, 2025

• naiss_file_transfer_course

  Public
  NAISS file transfer course

  dataswedentransfer+ 9hpcrsyncsftpscpdata-transferfile-transferfilezilla+ 2

  Shell

  •

  GNU General Public License v3.0

  •0•0•4•0•Updated Dec 22, 2025Dec 22, 2025

• linux-command-line-201

  Public
  NAISS course 'Command Line 201'

  linuxbashcourse+ 4command-lineintermediate201naiss

  Shell

  •

  GNU General Public License v3.0

  •0•3•3•0•Updated Dec 22, 2025Dec 22, 2025

• naiss_intro_python

  Public
  pythoncoursebeginner+ 4lessonsintroductionintrouppmax

  Shell

  •0•0•0•0•Updated Dec 22, 2025Dec 22, 2025

• UPPMAX-documentation

  Public
  documentationswedenhpc+ 7uppmaxcenterbiancauppsalamajapellerackham

  Python

  •

  Other

  •5•9•24•0•Updated Dec 22, 2025Dec 22, 2025

• R-matlab-julia-HPC

  Public
  Shell

  •2•12•8•0•Updated Dec 22, 2025Dec 22, 2025

• bianca_workshops

  Public
  trainingcourseworkshop+ 5hpcclusteruseuppmaxbianca

  Shell

  •4•2•7•0•Updated Dec 22, 2025Dec 22, 2025

• naiss_course_template

  Public
  A NAISS course template

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 22, 2025Dec 22, 2025

• programming_formalisms

  Public
  Repository for the Programming Formalisms course

  swedenprogrammingcourse+ 6englishuppmaxformalismnbisprogramming-formalismsformalisms

  Shell

  •

  GNU General Public License v3.0

  •9•1•6•0•Updated Dec 18, 2025Dec 18, 2025

• uppmax_intro_day_1

  Public
  Day 1 of the UPPMAX intro course

  hpcclusterintroduction+ 5introuppmaxcomputer-clusteruppsala-universityuppsala

  Shell

  •

  GNU General Public License v3.0

  •0•1•2•0•Updated Dec 18, 2025Dec 18, 2025

• NAISS_Slurm

  Public
  Repository for the Slurm at NAISS workshop

  Shell

  •0•1•2•0•Updated Dec 9, 2025Dec 9, 2025

• LLM-workshop

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•8•0•0•Updated Nov 23, 2025Nov 23, 2025

• install-methods

  Public
  Install methods for UPPMAX modules plus some helper scripts

  HTML

  •3•9•1•1•Updated Nov 19, 2025Nov 19, 2025

• to-awk-or-not

  Public
  This repositiory serves as an auxiliary material to an awk course/seminar page.

  HTML

  •

  GNU General Public License v3.0

  •7•0•0•0•Updated Nov 19, 2025Nov 19, 2025

• Basic_Singularity_Apptainer

  Public
  Online material for the NAISS "Basic Singularity/Apptainer workshop"

  Shell

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Oct 14, 2025Oct 14, 2025

• Experimental_tools

  Public
  A repository for sharing code of smaller projects in development stages.

  Python

  •0•0•0•0•Updated Oct 12, 2025Oct 12, 2025

• awk_course

  Public
  Teaching material for the UPPMAX Awk course

  courseawkuppmax+ 1uppsala

  Shell

  •

  GNU General Public License v3.0

  •1•1•1•0•Updated Aug 25, 2025Aug 25, 2025

• PDC-support-web

  Public
  Python

  •4•0•0•0•Updated Jun 4, 2025Jun 4, 2025

• uppmax4DL

  Public
  UPPMAX for Deep Learning course material

  HTML

  •0•1•0•0•Updated May 9, 2025May 9, 2025

• R-python-julia-matlab-HPC

  Public
  Shell

  •0•0•2•0•Updated Feb 18, 2025Feb 18, 2025

• Whisper-sens

  Public
  A Whisper gui for sensitive data

  HTML

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• ticket_306807

  Public
  Ticket 306807

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• ticket_304069

  Public
  RT ticket 304069

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• uppmax_board_presentation_20241203

  Public
  Presentation to the UPPMAX board on 2024-12-03

  CSS

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

• programming_formalisms_intro

  Public
  Programming formalisms intro

  Creative Commons Attribution 4.0 International

  •0•1•0•0•Updated Nov 18, 2024Nov 18, 2024

• ticket_299338

  Public
  Notes for RT ticket 299338

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

• ticket_297538

  Public
  Notes for ticket 297538

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

• ticket_295686

  Public
  0•0•1•0•Updated Sep 11, 2024Sep 11, 2024

• DNABERT_2

  Public
  [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

  Shell

  •

  Apache License 2.0

  •92•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• ticket_298623

  Public
  Notes for ticket 298623

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 6, 2024Sep 6, 2024