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    16 repositories

    • annolid

      Public
      An annotation and instance segmentation-based multiple animal tracking and behavior analysis package.
      Python
      •
      Other
      •11•1•0•0•Updated Sep 17, 2026Sep 17, 2026

    • ephys_analysis

      Public
      Tutorials and scripts for analyzing electrophysiological data.
      neurosciencesynchronyoscillation
      neurosciencesynchronyoscillationelectrophysiological-data
      Jupyter Notebook
      •3•1•0•0•Updated Feb 7, 2026Feb 7, 2026

    • sapinet_regularization

      Public
      Reproduction of simulations from Moyal et al. (2025): Heterogeneous quantization regularizes spiking neural network activity.
      Python
      •0•1•0•0•Updated Apr 23, 2025Apr 23, 2025

    • sapicore

      Public
      A PyTorch-based framework for neuromorphic modeling.
      frameworkmodelingneuroscience
      frameworkmodelingneurosciencepytorchneuromorphic-computing
      Python
      •2•5•20•0•Updated Apr 3, 2025Apr 3, 2025

    • odorsampling3

      Public
      Odor Sampling (Python3)
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 12, 2024Jun 12, 2024

    • odorsampling

      Public
      Model of physicochemical odor sampling by animal olfactory systems
      Python
      •
      MIT License
      •5•0•0•0•Updated Jun 4, 2024Jun 4, 2024

    • EPLNetwork_Schmuker

      Public
      Online learning model of olfactory bulb external plexiform layer network (Imam & Cleland 2020)
      Python
      •5•0•0•0•Updated Nov 10, 2022Nov 10, 2022

    • pyreg

      Public
      Image registration package for python
      Python
      •
      MIT License
      •2•0•0•0•Updated Mar 21, 2022Mar 21, 2022

    • ceed

      Public
      Slice stimulation and recordings
      Python
      •
      MIT License
      •3•2•0•0•Updated Mar 4, 2020Mar 4, 2020

    • ClearMap

      Public
      ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
      Python
      •
      GNU General Public License v3.0
      •39•0•0•0•Updated Jul 19, 2018Jul 19, 2018

    • myriad

      Public
      Myriad, a GPU-aware biophysical neuronal simulator.
      Python
      •
      GNU Lesser General Public License v3.0
      •2•0•1•1•Updated Nov 20, 2016Nov 20, 2016

    • neo_paths

      Public
      Python
      •0•0•0•0•Updated Mar 20, 2016Mar 20, 2016

    • klustakwik

      Public
      Fast software for high-dimensional cluster analysis using the masked EM algorithm for Gaussians mixtures. (Can also be used in "classical" mode for standard har…
      C++
      •23•0•0•0•Updated Nov 7, 2014Nov 7, 2014

    • Optimizer2

      Public
      A command line optimization software
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 13, 2014Oct 13, 2014

    • pycparser

      Public
      Complete C99 parser in pure Python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •650•0•0•0•Updated Jul 24, 2014Jul 24, 2014

    • LSCE

      Public
      Python
      •3•0•0•0•Updated Dec 16, 2013Dec 16, 2013
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