Harvard Medical School - Department of Biomedical Informatics

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385 repositories

avillachlab-jenkins-bdc-etl
Public
Shell
•
Apache License 2.0
•0•0•0•0•Updated Dec 18, 2025Dec 18, 2025
PIC-SURE-Frontend
Public
A frontend for the PIC-SURE API
TypeScript
•
Apache License 2.0
•1•1•0•7•Updated Dec 18, 2025Dec 18, 2025
pic-sure
Public
PIC-SURE API
pic-sure picsure
Java
•
Apache License 2.0
•3•6•0•1•Updated Dec 18, 2025Dec 18, 2025
picsure-dictionary-etl
Public
Java
•
Apache License 2.0
•0•1•0•1•Updated Dec 18, 2025Dec 18, 2025
i2b2v2-webclient
Public
JavaScript
•5•2•1•2•Updated Dec 17, 2025Dec 17, 2025
pic-sure-bdc-release-control
Public
Apache License 2.0
•8•1•0•0•Updated Dec 17, 2025Dec 17, 2025
gehlenborglab-website
Public
Code for HIDIVE Lab website.
website hidivelab
TypeScript
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MIT License
•41•10•11•2•Updated Dec 17, 2025Dec 17, 2025
scellop
Public
Cell Population Viewer
cell-populations hidivelab
TypeScript
•
MIT License
•1•2•5•3•Updated Dec 17, 2025Dec 17, 2025
pic-sure-bdc-infrastructure
Public
HCL
•
Apache License 2.0
•1•5•0•2•Updated Dec 17, 2025Dec 17, 2025
pic-sure-hpds
Public
Java
•
Apache License 2.0
•7•3•0•2•Updated Dec 17, 2025Dec 17, 2025
ETLToolSuite-EntityGenerator
Public
This tool will generate Entity Files that can be used to load into Datasources.
Java
•
Apache License 2.0
•0•0•0•1•Updated Dec 17, 2025Dec 17, 2025
viv
Public
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
imaging ome-tiff openmicroscopy zarr viv hubmap hidivelab
JavaScript
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MIT License
•57•329•57•19•Updated Dec 17, 2025Dec 17, 2025
GQVis-Generation
Public
code for generating genomics training data used for fine-tuning the LLM
Python
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MIT License
•3•0•0•6•Updated Dec 16, 2025Dec 16, 2025
DQVis-Generation
Public
code for generating training data used for fine-tuning the LLM
hidivelab
Jupyter Notebook
•
MIT License
•3•3•1•9•Updated Dec 16, 2025Dec 16, 2025
avillachlab-jenkins-bdc-etl-genomic
Public
Shell
•
Apache License 2.0
•0•0•0•0•Updated Dec 16, 2025Dec 16, 2025
ETL-MissionControl-dbgap-submodule
Public
ETL-MissionControl-dbgap-submodule
Python
•
Apache License 2.0
•0•0•0•2•Updated Dec 16, 2025Dec 16, 2025
biodata_catalyst_stigmatizing_variables
Public
Jupyter Notebook
•
Apache License 2.0
•0•1•0•0•Updated Dec 15, 2025Dec 15, 2025
hypatio-app
Public
Python
•1•4•0•8•Updated Dec 15, 2025Dec 15, 2025
dbmi-fileservice
Public
Python
•0•2•0•4•Updated Dec 15, 2025Dec 15, 2025
dbmisvc-starter
Public
Python
•0•1•0•3•Updated Dec 15, 2025Dec 15, 2025
chromoscope
Public
Interactive multiscale visualization for structural variation in human genomes
hidivelab
TypeScript
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MIT License
•6•70•37•3•Updated Dec 12, 2025Dec 12, 2025
pic-sure-baseline-release-control
Public
5•0•0•0•Updated Dec 11, 2025Dec 11, 2025
PIC-SURE-Migrations
Public
Database migrations for the PIC-SURE All-in-One.
Apache License 2.0
•0•0•0•1•Updated Dec 11, 2025Dec 11, 2025
fda-pediatric-studies
Public
Reproducible R code for analyses of pediatric studies and labeling additions required by the US FDA
R
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Apache License 2.0
•0•0•0•0•Updated Dec 11, 2025Dec 11, 2025
avillachlab-jenkins
Public
HCL
•
Apache License 2.0
•6•5•0•0•Updated Dec 10, 2025Dec 10, 2025
InterSCellar
Public
Python
•
MIT License
•1•16•0•1•Updated Dec 10, 2025Dec 10, 2025
Access-to-Data-using-PIC-SURE-API
Public
Jupyter Notebook
•
Apache License 2.0
•8•8•0•0•Updated Dec 9, 2025Dec 9, 2025
P5
Public
Python
•0•1•0•0•Updated Dec 8, 2025Dec 8, 2025
uchimata-py
Public
Visualization of 3D genome models in notebooks
hidivelab
Python
•
MIT License
•0•1•2•0•Updated Dec 7, 2025Dec 7, 2025
aws-finops-dashboard
Public
A terminal-based AWS cost and resource dashboard built with Python and the Rich library. It provides an overview of AWS spend by account, service-level breakdowns, budget tracking, and EC2 instance summaries.
Python
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MIT License
•240•0•0•1•Updated Dec 6, 2025Dec 6, 2025