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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    HTML 842 164

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 180 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 374 64

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 201 44

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 721 116

Repositories

Showing 10 of 399 repositories
  • udi-yac Public

    Monorepo containing front-end/back-end code for the UDI visualization language and YAC chat interface.

    hms-dbmi/udi-yac's past year of commit activity
    Python 4 MIT 2 49 11 Updated Nov 12, 2026
  • pic-sure Public

    PIC-SURE API

    hms-dbmi/pic-sure's past year of commit activity
    Java 6 Apache-2.0 6 0 17 Updated Nov 12, 2026
  • i2b2v2-webclient Public

    Harvard Catalyst group's working repo

    hms-dbmi/i2b2v2-webclient's past year of commit activity
    JavaScript 2 6 0 4 Updated Nov 12, 2026
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend's past year of commit activity
    TypeScript 1 Apache-2.0 4 1 16 Updated Nov 11, 2026
  • gehlenborglab-website Public

    Code for HIDIVE Lab website.

    hms-dbmi/gehlenborglab-website's past year of commit activity
    TypeScript 10 MIT 42 13 10 Updated Nov 11, 2026
  • pic-sure-hpds-etl Public
    hms-dbmi/pic-sure-hpds-etl's past year of commit activity
    Java 0 Apache-2.0 1 0 0 Updated Nov 10, 2026
  • Access-to-Data-using-PIC-SURE-API Public
    hms-dbmi/Access-to-Data-using-PIC-SURE-API's past year of commit activity
    Jupyter Notebook 8 Apache-2.0 9 0 1 Updated Nov 10, 2026
  • METASIGHT Public
    hms-dbmi/METASIGHT's past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated Nov 10, 2026
  • pic-sure-bdc-release-control Public
    hms-dbmi/pic-sure-bdc-release-control's past year of commit activity
    1 Apache-2.0 9 0 0 Updated Nov 10, 2026
  • pic-sure-bdc-infrastructure Public
    hms-dbmi/pic-sure-bdc-infrastructure's past year of commit activity
    HCL 5 Apache-2.0 2 0 3 Updated Nov 10, 2026
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