Skip to content

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

83 Commits
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

name alt text DOI

ChemNLP

Table of Contents

Introduction

ChemNLP is a software-package to process chemical information from the scientific literature.

ChemNLP

Installation

First create a conda environment: Install miniconda environment from https://conda.io/miniconda.html Based on your system requirements, you'll get a file something like 'Miniconda3-latest-XYZ'.

Now,

bash Miniconda3-latest-Linux-x86_64.sh (for linux)
bash Miniconda3-latest-MacOSX-x86_64.sh (for Mac)

Download 32/64 bit python 3.8 miniconda exe and install (for windows) Now, let's make a conda environment, say "chemnlp", choose other name as you like::

conda create --name chemnlp python=3.9
source activate chemnlp

Method 1 (using setup.py):

Now, let's install the package:

git clone https://github.com/usnistgov/chemnlp.git
cd chemnlp
python setup.py develop
cde data download

Method 2 (using pypi):

As an alternate method, ChemNLP can also be installed using pip command as follows:

pip install chemnlp
cde data download

Examples

Parse chemical formula

run_chemnlp.py --file_path="chemnlp/tests/XYZ"

Text classification example

python chemnlp/classification/scikit_class.py --csv_path chemnlp/sample_data/cond_mat_small.csv

Google Colab example for installation and text classification

Text generation example

Google Colab example for Text Generation with HuggingFace

Using the webapp

The webapp is available at: https://jarvis.nist.gov/jarvischemnlp

JARVIS-ChemNLP

Reference

  1. ChemNLP: A Natural Language Processing based Library for Materials Chemistry Text Data
  2. AtomGPT: Atomistic Generative Pretrained Transformer for Forward and Inverse Materials Design
  3. JARVIS-Leaderboard
  4. NIST-JARVIS Infrastructure

Note: This project was originally developed under the github.com/usnistgov organization. New updates and developments will be carried out here.

About

No description, website, or topics provided.

Resources

Stars

Watchers

Forks

Releases

Packages

Contributors

Languages