iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

Wasm powered Jupyter running in the browser 💡

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.

The ARTIC fieldbioinformatics pipeline

Routing Tree Web Toolkit

Influenza genome analysis Nextflow workflow

Approximate nearest neighbour search for microbial genomes based on hash metric

Hyper LogLog (native and sliding) cardinality counters

Visualization of the pan-genome output by panX

A Python Perceptual Image Hashing Module

The express way to send mail from Ruby.

A Cytoscape app for importing KGML(KEGG pathway XML)

Learn Ruby with the Edgecase Ruby Koans

Official release of the ProGen models

generating hardware accelerators for pangenomic graph queries

Extends Sinatra with ActiveRecord helper methods and Rake tasks.

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

Beautiful static documentation for your API

Fast string edit distance computation, using the Damerau-Levenshtein algorithm.

Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on a laptop within a few hours.

WebAssembly modules for genomics

moved to puppetlabs/showoff!

Rust binding for WFA2-lib

Manage large binary files with git

Very fast ONT basecaller (forked from compbio)

An open-source AirPlay mirroring server for the Raspberry Pi. Supports iOS 9 and up.

Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)

repository-based plasmid design

Scalable Bloom Filter implemented in Python