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@fiji @imagej @imglib @bigdataviewer @janelia-cellmap

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7 stars written in Java
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Picocli is a modern framework for building powerful, user-friendly, GraalVM-enabled command line apps with ease. It supports colors, autocompletion, subcommands, and more. In 1 source file so apps …

Java 5,349 456 Updated Oct 30, 2025

Fiji module for image transformation and related algorithms

Java 71 73 Updated Oct 16, 2025

ImgLib2-based viewer for registered SPIM stacks and more

Java 42 42 Updated Mar 20, 2026

Helpers to use BigDataViewer as a quick visualization tool in other projects.

Java 26 18 Updated Jun 13, 2024

A Jupyter kernel for executing Java code.

Java 20 13 Updated Sep 28, 2023

Inspector for NGFF-style containers supported by the N5 API (N5, HDF5, OME-Zarr)

Java 1 Updated Nov 14, 2023

N5 library implementation using Google Cloud Storage backend.

Java 1 3 Updated Mar 9, 2026