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ImageJ

Open source scientific multidimensional image processing

ImageJ is open source software for processing and analyzing scientific images.

ImageJ is the original desktop application which has been in development since 1997.

ImageJ2 is a new version of ImageJ targeting scientific multidimensional image data.

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  1. ImageJ ImageJ Public

    Public domain software for processing and analyzing scientific images

    Java 799 271

  2. imagej2 imagej2 Public

    Open scientific N-dimensional image processing 🔬 🎇

    Java 1.4k 348

  3. pyimagej pyimagej Public

    Use ImageJ from Python

    Python 537 94

  4. tutorials tutorials Public

    ImageJ2 programming examples

    Jupyter Notebook 200 116

  5. imagej.github.io imagej.github.io Public

    The ImageJ wiki

    JavaScript 30 211

  6. list-of-update-sites list-of-update-sites Public

    The update sites ImageJ2 knows about automatically

    Python 9 117

Repositories

Showing 10 of 84 repositories
  • imagej.github.io Public

    The ImageJ wiki

    imagej/imagej.github.io's past year of commit activity
    JavaScript 30 211 61 (1 issue needs help) 5 Updated Nov 11, 2026
  • ij1-patcher Public

    Extension points for ImageJ via runtime patching to support (limited) headless operation and ImageJ2's legacy layer

    imagej/ij1-patcher's past year of commit activity
    Java 5 BSD-2-Clause 7 7 0 Updated Nov 11, 2026
  • imagej-command-archetype Public

    Maven archetype for a SciJava/ImageJ2 Command

    imagej/imagej-command-archetype's past year of commit activity
    Java 2 3 0 0 Updated Nov 11, 2026
  • example-legacy-plugin Public template

    Simple Maven project for an ImageJ 1.x plugin

    imagej/example-legacy-plugin's past year of commit activity
    Java 35 44 2 1 Updated Nov 11, 2026
  • example-imagej2-command-kotlin Public template

    An ImageJ2 command that mixes Kotlin and Java code

    imagej/example-imagej2-command-kotlin's past year of commit activity
    Kotlin 5 BSD-2-Clause 2 0 0 Updated Nov 11, 2026
  • example-imagej2-command Public template

    Simple Maven project for an ImageJ2 command

    imagej/example-imagej2-command's past year of commit activity
    Java 34 18 1 0 Updated Nov 11, 2026
  • list-of-update-sites Public

    The update sites ImageJ2 knows about automatically

    imagej/list-of-update-sites's past year of commit activity
    Python 9 117 1 0 Updated Nov 9, 2026
  • imagej-mesh Public

    [DEPRECATED] use https://github.com/imglib/imglib2-mesh instead

    imagej/imagej-mesh's past year of commit activity
    Java 6 4 7 2 Updated Nov 7, 2026
  • op-finder Public

    Utility for browsing, learning about and running all available Ops

    imagej/op-finder's past year of commit activity
    Java 1 GPL-3.0 2 3 0 Updated Nov 7, 2026
  • imagej-updater Public

    The automatic updater for ImageJ

    imagej/imagej-updater's past year of commit activity
    Java 13 15 58 3 Updated Nov 7, 2026