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27 stars written in Python
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Configuration Management for Python ⚙

Python 4,252 311 Updated Feb 2, 2026

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Python 3,620 770 Updated Oct 21, 2025

Run Windows Applications on Linux as if they are native, Use linux applications to launch files files located in windows vm without needing to install applications on vm. With easy to use configura…

Python 3,473 96 Updated Mar 28, 2024

python module to plot beautiful and highly customizable genome browser tracks

Python 863 126 Updated Jul 10, 2024

ChIP-seq analysis notes from Ming Tang

Python 839 310 Updated Aug 5, 2024

MACS -- Model-based Analysis of ChIP-Seq

Python 768 271 Updated Jan 30, 2026

Yet another redundant workflow engine

Python 576 53 Updated Dec 10, 2025

ProSPr: Protein Structure Prediction

Python 419 85 Updated Oct 6, 2022

A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

Python 206 95 Updated May 28, 2023

Bibcure helps in boring tasks by keeping your bibfile up to date and normalized...also allows you to easily download all papers inside your bibtex

Python 206 18 Updated Jan 13, 2023

IDR

Python 175 46 Updated Sep 18, 2018

Automatic and optimised consensus clustering of one or more heterogeneous datasets

Python 167 36 Updated Oct 31, 2022

NGS-pipe: next-generation sequencing pipelines for precision oncology

Python 114 52 Updated Feb 19, 2019

CADD scripts release for offline scoring. For more information about CADD, please visit our website

Python 90 39 Updated Oct 30, 2025

ClassifyCNV: a tool for clinical annotation of copy-number variants

Python 70 16 Updated Jun 26, 2023

Clinical interpretation of somatic mutations in cancer

Python 50 15 Updated Feb 20, 2025

A Program that creates a Spotify playlist from a YouTube Playlist

Python 45 6 Updated Dec 25, 2021

a peak-calling and differential analysis tool for replicated ChIP-Seq data

Python 37 9 Updated May 18, 2022

detection of duplications and deletions using Python based machine learning techniques

Python 28 4 Updated Jul 22, 2019

Microsatellite Instability Classification using Multiple Instance Learning

Python 27 8 Updated Mar 3, 2025
Python 26 9 Updated Dec 5, 2022

A simple implementation of the circular binary segmentation algorithm in python

Python 26 11 Updated Jan 3, 2019

Simplify snpEff annotations for interesting cases

Python 22 5 Updated Feb 18, 2019

Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage sequence data.

Python 18 1 Updated Oct 10, 2022

Peak calling tool for CLIP-seq data

Python 14 4 Updated Apr 7, 2021

A generalised significance test for individual communities in networks

Python 9 3 Updated Mar 14, 2022

Benchmarking ChIP-seq peak callers

Python 5 3 Updated Dec 11, 2018