Multi-sample Unified Discriminant ANalysis

Automatic and optimised consensus clustering of one or more heterogeneous datasets

Community fork of PlayCover

A simple implementation of the circular binary segmentation algorithm in python

A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic stem and progenitor cells and differentiated populations

python module to plot beautiful and highly customizable genome browser tracks

Simulation tool for ChIP- and other -seq experiments

Benchmarking ChIP-seq peak callers

ChIP-seq analysis notes from Ming Tang

Using combined evidence from replicates to evaluate ChIP-seq peaks

Peak caller for CUT&TAG data

SEACR: Sparse Enrichment Analysis for CUT&RUN

Peak calling tool for CLIP-seq data

MACS -- Model-based Analysis of ChIP-Seq

Detecting sites of genomic enrichment

Intro to ChIPseq using HPC

a peak-calling and differential analysis tool for replicated ChIP-Seq data

Interactive Delphi Reconstructor

A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

Set of solutions for the Advanced R programming book

IDR

Configuration Management for Python ⚙

Analysis Pipeline for Single Cell ATAC-seq

Bibcure helps in boring tasks by keeping your bibfile up to date and normalized...also allows you to easily download all papers inside your bibtex

A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

ClassifyCNV: a tool for clinical annotation of copy-number variants

ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.

A pandoc LaTeX template to convert markdown files to PDF or LaTeX.

A python library to build Model Trees with Linear Models at the leaves.