- Bioinformatician with a double master's in Biotechnology (India) and Precision Medicine (Uppsala University, Sweden) with knowledge and experience of working in both wet-lab and dry-lab environments.
Nextflow · nf-core · Python · R · Bash · Linux/HPC · Docker · Git
Dedicated QC-only pipeline for sequencing data.
Contributions :
- Development of the pipeline by adding subworkflows and QC modules such as Picard tools, SAMtools, BWA-MEM2, fastp, fqlint, Kraken2.
- Wrote module tests and assisted in the pipeline release.
Significance: Adaptive sampling on Oxford Nanopore Technologies (ONT) platforms selectively sequence target molecules by alignment to a reference genome. This project aimed to replace the alignment step with a deep learning-based taxonomic classifier (BERTax), enabling enrichment of broad taxonomic groups rather than specific known organisms.
- Contributing to nf-core/sarek modularization
- Working on AI Automation workflows
Let's build something. → LinkedIn