Issues

• Question about filtering external CDSs supplied with -c

  alekseyzimin/EviAnn_release#83 · Filter by author hibiki-kato opened on Sep 10, 2026
  2

• Failed to merge transcripts

  alekseyzimin/EviAnn_release#81 · Filter by author kuangzhuoran opened on Aug 13, 2026
  1

• Duplicate protein ID due to gffread split aborts run at final combine step

  alekseyzimin/EviAnn_release#80 · Filter by author jbh-cas opened on Aug 9, 2026
  3

• BAM filtering for PacBio Iso-Seq alignments

  alekseyzimin/EviAnn_release#79 · Filter by author zhangyixing3 opened on Aug 8, 2026
  1

• Non-standard genetic code support

  alekseyzimin/EviAnn_release#77 · Filter by author jerry-bio28 opened on Jul 23, 2026
  1

• malformed list of transcriptome data not caught

  alekseyzimin/EviAnn_release#75 · Filter by author peterjc opened on Jul 13, 2026
  5

• Checksum mismatch / why are release tarballs in repository root?

  alekseyzimin/EviAnn_release#72 · Filter by author peterjc opened on Jul 13, 2026

• Missing version 2.0.6 on GitHub Releases

  alekseyzimin/EviAnn_release#70 · Filter by author peterjc opened on Jul 13, 2026
  1

• All protein_only mRNAs are single-exon

  alekseyzimin/EviAnn_release#69 · Filter by author zhangrengang opened on Jul 9, 2026
  1

• Too large genome [E::bam_write1] Positional data is too large for BAM format

  alekseyzimin/EviAnn_release#68 · Filter by author jianghao0799 opened on Jun 30, 2026
  4

• 2 1/2 or so silly questions

  alekseyzimin/EviAnn_release#67 · Filter by author jbh-cas opened on Jun 29, 2026
  1

• Handling gene inflation and predictor selection with external de novo inputs (Follow-up to #58)

  alekseyzimin/EviAnn_release#66 · Filter by author Mollyuki opened on Jun 1, 2026

• Help annotating non-coding RNA - extracting lncRNAs

  alekseyzimin/EviAnn_release#65 · Filter by author desmodus1984 opened on May 11, 2026
  1

• Puzling impact of RNAseq normalization on annotation numbers

  alekseyzimin/EviAnn_release#64 · Filter by author sivico26 opened on May 5, 2026
  5

• Unknown option -l

  alekseyzimin/EviAnn_release#62 · Filter by author YakunWang opened on Apr 8, 2026
  2

• Annotation evidence of the transcript

  alekseyzimin/EviAnn_release#61 · Filter by author jwli-code opened on Apr 7, 2026
  6

• Potential Memory Issue / StringTie Error with Large-scale ONT and Illumina RNA-seq Integration

  alekseyzimin/EviAnn_release#59 · Filter by author BinZheng1998 opened on Mar 21, 2026
  2

• multi extra file

  alekseyzimin/EviAnn_release#58 · Filter by author jwli-code opened on Mar 20, 2026
  4

• Use of RNA-seq and ONT under different conditions

  alekseyzimin/EviAnn_release#57 · Filter by author SanSanMX opened on Feb 5, 2026
  5

• Bug Report: Missing quotation marks in eviann.sh (line 345) causes $UFASTA command failure in generated scripts(EviAnn v2.0.5)

  alekseyzimin/EviAnn_release#56 · Filter by author jiangxiuhan0310 opened on Jan 16, 2026
  3

• nextflow version?

  alekseyzimin/EviAnn_release#55 · Filter by author linyuiz opened on Dec 30, 2025
  3

• How to resolve the issue of software generating too many chimeric genes?

  alekseyzimin/EviAnn_release#51 · Filter by author hwlnovo opened on Nov 24, 2025
  10

• Low BUSCO score after annotation

  alekseyzimin/EviAnn_release#50 · Filter by author desmodus1984 opened on Nov 18, 2025
  10

• Merge annotation files from multiple software

  alekseyzimin/EviAnn_release#49 · Filter by author zhouxp9709 opened on Oct 24, 2025
  1

• Merging transcript and protein evidence failed

  alekseyzimin/EviAnn_release#48 · Filter by author swatiebi opened on Oct 16, 2025
  5