Stars
An Open Source Machine Learning Framework for Everyone
Empowering everyone to build reliable and efficient software.
Tensors and Dynamic neural networks in Python with strong GPU acceleration
Git Source Code Mirror - This is a publish-only repository but pull requests can be turned into patches to the mailing list via GitGitGadget (https://gitgitgadget.github.io/). Please follow Documen…
An Emacs framework for the stubborn martian hacker
Jupyter notebooks for the code samples of the book "Deep Learning with Python"
Open source code for AlphaFold 2.
AlphaFold 3 inference pipeline.
Genome modeling and design across all domains of life
This is the development home of the workflow management system Snakemake. For general information, see
A list of deep learning implementations in biology
A versatile pairwise aligner for genomic and spliced nucleotide sequences
MMseqs2: ultra fast and sensitive search and clustering suite
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Biological foundation modeling from molecular to genome scale
Accelerated BLAST compatible local sequence aligner.
Applied Computational Genomics Course at UU: Spring 2020
De novo assembler for single molecule sequencing reads using repeat graphs
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
The second version of the Kraken taxonomic sequence classification system
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
🍁 Generate infrastructure and network diagrams directly from your NixOS configurations
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Ultra-fast and memory-efficient (meta-)genome assembler