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CONICS: COpy-Number analysis In single-Cell RNA-Sequencing

R 77 28 Updated Feb 27, 2023

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of m…

HTML 127 39 Updated Mar 19, 2026

Inferring CNV from Single-Cell RNA-Seq

R 675 178 Updated Nov 14, 2025
R 90 28 Updated Apr 5, 2021

Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome

R 223 35 Updated Feb 4, 2026

Explore and annotate your multi-channel large TIF files with this user-friendly viewer.

JavaScript 7 2 Updated May 19, 2026

TypeScript wrapper around Canton V2 JSON API

TypeScript 7 1 Updated Jun 17, 2026

The best-benchmarked open-source AI memory system. And it's free.

Python 55,906 7,245 Updated Jun 15, 2026

An Interface for Immune Receptor and HLA Gene Reference Data

R 9 1 Updated Apr 3, 2026
Jupyter Notebook 12,969 954 Updated Oct 25, 2025

Purple Computer

Python 15 1 Updated Jun 15, 2026

Investigative data journalism: quantifying fixable waste in US healthcare, one issue at a time. Open-source analysis of CMS, OECD, and federal datasets. $428.6B in savings identified so far across …

Python 224 4 Updated Jun 14, 2026

Talk to your Mac, query your docs, no cloud required. On-device voice AI + RAG

C++ 1,523 82 Updated Mar 16, 2026
JavaScript 228 18 Updated Mar 9, 2026

Google Workspace CLI — one command-line tool for Drive, Gmail, Calendar, Sheets, Docs, Chat, Admin, and more. Dynamically built from Google Discovery Service. Includes AI agent skills.

Rust 27,139 1,427 Updated Jun 10, 2026

Give your agents the power of the Hugging Face ecosystem

Python 10,691 703 Updated Jun 16, 2026

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 140 ready-to-use skills plus 100+ scientific databases covering biology, chem…

Python 28,643 2,923 Updated Jun 15, 2026

CLI for common Playwright actions. Record and generate Playwright code, inspect selectors and take screenshots.

TypeScript 11,415 597 Updated Jun 10, 2026

March 19 Platform is an inclusive, nonpartisan grassroots movement committed to upholding democratic values, the rule of law, and human rights in Türkiye. We empower communities, amplify silenced v…

Nunjucks 1 Updated May 25, 2026

Eigent: The Open Source Cowork Desktop to Unlock Your Exceptional Productivity. Local and Free Alternative to Claude Cowork.

TypeScript 14,321 1,691 Updated Jun 18, 2026

Intuitive guide to multi-omics integration with toy examples: supervised latent components (DIABLO), unsupervised shared/partial/unique structure (DIVAS), VAEs/conditional VAEs, and key baselines (…

Python 86 16 Updated Dec 28, 2025

OpenRecall is a fully open-source, privacy-first alternative to proprietary solutions like Microsoft's Windows Recall. With OpenRecall, you can easily access your digital history, enhancing your me…

Python 2,860 186 Updated Sep 24, 2025

Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR

R 115 7 Updated Dec 18, 2025

A set of thinking/computational exercises that are facilitated by various Deep Research tools

Jupyter Notebook 6 1 Updated Jan 26, 2026

TCR Repertoire Analysis and Lung Cancer Prediction

R 6 2 Updated Aug 6, 2025

A package to help convert a plumber API into an MCP server

R 8 1 Updated Nov 22, 2025

MCP server to ease integration of HGNC resources

R 1 Updated Nov 12, 2025

A webtool to help mine FDA's CRL data

Python 5 1 Updated Jun 18, 2026

Machine Learning Systems

Python 24,953 3,002 Updated Jun 17, 2026
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