HDF5 for Rust

Hyperlight is a lightweight Virtual Machine Manager (VMM) designed to be embedded within applications. It enables safe execution of untrusted code within micro virtual machines with very low latenc…

Minimalist ML framework for Rust

JTK -- a regional diploid genome assembler

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

PECAT, a phased error correct and assembly tool

Fast hash function for DNA/RNA sequences

Personal collection of scripts for installing Lmod modules

C implementation of the Landau-Vishkin algorithm

min-cost-flow(circulation) with convex cost function on petgraph

Rust implementation of the Loopy Belief propagation algorithm for inference in Bayesian Networks

Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment

software tools for haplotype assembly from sequence data

diploid SNV caller for error-prone reads

コードで学ぶAWS入門

MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences

Nonconvex embedded optimization: code generation for fast real-time optimization + ROS support

Generate interactive dotplot from mummer4 output using plotly

Imitating Keras to Deepen understanding.

Rust bindings for the Python interpreter

A fast static site generator in a single binary with everything built-in. https://www.getzola.org

Static site generator written in Rust

The Hacker's Machine Learning Engine

Mummer alignment tool

Pairwise Sequence Alignment Library

Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.