-
-
-
-
ggtranscript Public
Forked from dzhang32/ggtranscriptVisualizing transcript structure and annotation using ggplot2
R Other UpdatedAug 24, 2024 -
DMRichR Public
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosin…
-
CpG_Me Public
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
-
cffDNA-and-Brain-Manuscript Public
Analyses for the manuscript "Multi-omic Brain and Behavioral Correlates of Cell-free Fetal DNA Methylation in Macaque Maternal Obesity Models."
-
PCB-Placenta-and-Brain Public
Analyses for the manuscript "Prenatal PCB exposure alters a shared neurodevelopmental DNA methylation profile in mouse placenta and fetal brain".
-
RNA-seq Public
RNA-seq alignment and analysis pipeline
-
Low-Pass-WGBS-of-DS-NDBS Public
Analyses for the manuscript "Low-Pass Whole Genome Bisulfite Sequencing of Neonatal Dried Blood Spots Identifies a Role for RUNX1 in Down Syndrome DNA Methylation Profiles"
-
LOLA Public
Forked from nsheff/LOLALocus Overlap Analysis: Enrichment of Genomic Ranges
R UpdatedMay 7, 2021 -
biocthis Public
Forked from lcolladotor/biocthisAutomate package and project setup for Bioconductor packages
R UpdatedApr 14, 2021 -
Tag-seq Public
3’ Tag RNA-seq pipeline (Work in progress)
-
ChIPseeker Public
Forked from jorainer/ChIPseeker🎯ChIP peak Annotation, Comparison and Visualization
R UpdatedJan 11, 2021 -
comethyl Public
Forked from cemordaunt/comethylAn R package for weighted region comethylation network analysis (Under development).
R Other UpdatedMay 13, 2020 -
CGi Public
Takes output from DMRichR and performs statistical testing and visualization for CpG and genic annotation enrichments
-
methylCC Public
Forked from stephaniehicks/methylCCR/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
R UpdatedApr 28, 2020 -
FlowSorted.Blood.WGBS.BLUEPRINT Public
Forked from stephaniehicks/FlowSorted.Blood.WGBS.BLUEPRINTA Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT
R UpdatedApr 28, 2020 -
GOfuncR Public
Forked from sgrote/GOfuncRR-package for GO-enrichment analyses
C++ UpdatedApr 5, 2020 -
FASTQ_Me Public
An example script of how to download WGBS data from SLIMS, check md5sums, merge lanes, and submit a project to CpG_Me
-
DMRfinder Public
Forked from cemordaunt/DMRfinderA pipeline to identify differentially-methylated regions from whole-genome bisulfite sequencing data
{{ message }}