Visualizing transcript structure and annotation using ggplot2

A library for creating complex UpSet plots with ggplot2 geoms

Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRanges), or set of control ranges that are matched across one …

An R interface to the MEME Suite

Reduce + Visualize Gene Ontology

Devel repository for bsseq

Genomic Association Tester

API for HOMER in R for Genomic Analysis using Tidy Conventions

Python package for imputing missing CpG methylation data at the read level

Cluster-based analysis of CpG methylation

Copy number variation (CNV) caller utilizing BAM files

Scripts for accessing revigo gene ontology plots from R

🎯 ChIP peak Annotation, Comparison and Visualization

Publication-ready volcano plots with enhanced colouring and labeling

Allele-specific alignment sorting

Pretty heatmaps

A Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT

Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.

A quality control analysis tool for high throughput sequencing data

📊 Circular and Rectangular Manhattan Plot

Useful bash one-liners for bioinformatics.

R data package for annotating/converting Gene IDs

R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms

Aggregate results from bioinformatics analyses across many samples into a single report.

R-package for GO-enrichment analyses

An R package for weighted region comethylation network analysis

Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"

Easily generate information-rich, publication-quality tables from R