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gitbook Public
Personal documentation site built with GitBook, covering topics in bioinformatics, computer science, and medical research.
Python UpdatedJul 28, 2025 -
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mag Public
Forked from nf-core/magAssembly and binning of metagenomes
Nextflow MIT License UpdatedJul 11, 2025 -
HiFi-16S-workflow Public
Forked from PacificBiosciences/HiFi-16S-workflowNextflow pipeline to analyze PacBio HiFi full-length 16S data
Nextflow BSD 3-Clause Clear License UpdatedJul 10, 2025 -
rnaseq Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Nextflow MIT License UpdatedJul 10, 2025 -
vcf2maf Public
Forked from mskcc/vcf2mafConvert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Perl Other UpdatedJul 10, 2025 -
tools Public
Utility Functions and Tools for Bioinformatics Analysis
R MIT License UpdatedJul 7, 2025 -
raredisease Public
Forked from nf-core/rarediseaseCall and score variants from WGS/WES of rare disease patients.
Nextflow MIT License UpdatedJul 1, 2025 -
benson1231.github.io Public
Source code for my personal website built with React.
Jupyter Notebook UpdatedJun 25, 2025 -
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cbioportal-docker-compose Public
Forked from cBioPortal/cbioportal-docker-composeRun cBioPortal using Docker Compose
Shell UpdatedJun 10, 2025 -
DataScience Public
Coding for data engineering, machine learning, and data analytics
Jupyter Notebook UpdatedJun 5, 2025 -
DeepLearning Public
Introductory deep learning practice and notes.
Jupyter Notebook UpdatedDec 29, 2024 -
NTU_Thesis_RNAseq Public
Scripts developed during my master’s program for RNA-seq analysis.
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NTU_methylation_analysis Public
Workflow and scripts for analyzing Illumina MethylationEPIC v2.0 array data using the sesame R package.
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NTU_scRNA-seq Public
scRNA-seq course materials and final project.
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NTU_transcriptomics_course Public
A collection of scripts and notes from my early practice in learning R programming.
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