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docs Public
Personal documentation site built with GitBook, covering topics in bioinformatics, computer science, and medical research.
Python UpdatedDec 13, 2025 -
github-actions-course-resources Public
Forked from academind/github-actions-course-resourcesResources (code, slides) for Academind's GitHub Actions course
JavaScript UpdatedDec 11, 2025 -
OptiType Public
Forked from FRED-2/OptiTypePrecision HLA typing from next-generation sequencing data
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 10, 2025 -
airflow-training Public
Hands-on Apache Airflow training with practical DAG examples and Docker-based setup.
Python MIT License UpdatedDec 2, 2025 -
project-portfolio Public
A collection of bioinformatics and statistical analysis projects, including multi-omics data processing, survival analysis, and visualization pipelines.
Jupyter Notebook MIT License UpdatedNov 25, 2025 -
nextflow-training Public
Forked from nextflow-io/trainingNextflow training material forked from nextflow-io
Nextflow Other UpdatedNov 22, 2025 -
rnafusion Public
Forked from nf-core/rnafusionRNA-seq analysis pipeline for detection of gene-fusions
Nextflow MIT License UpdatedNov 20, 2025 -
metabolomics-training Public
Docker-ready metabolomics analysis workflow using MetaboAnalystR 4.0 for LC-MS, statistics, enrichment, and pathway analysis.
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MetaboAnalyst_web_docker Public
Forked from xia-lab/MetaboAnalyst_DockerDocker for MetaboAnalyst 4.0
Dockerfile UpdatedNov 18, 2025 -
tools Public
Utility Functions and Tools for Bioinformatics Analysis
R MIT License UpdatedNov 15, 2025 -
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snakemake-training Public
Minimal and reproducible Snakemake training workflow using Conda and Docker Compose
Python MIT License UpdatedOct 23, 2025 -
cbioportal-docker-compose Public
Forked from cBioPortal/cbioportal-docker-composeRun cBioPortal using Docker Compose
Shell UpdatedOct 13, 2025 -
snakemake-rnaseq Public
A reproducible RNA-seq analysis pipeline built with Snakemake, supporting QC, alignment, quantification, and differential expression.
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chipseq Public
Forked from nf-core/chipseqChIP-seq peak-calling, QC and differential analysis pipeline.
Nextflow MIT License UpdatedSep 8, 2025 -
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mag Public
Forked from nf-core/magAssembly and binning of metagenomes
Nextflow MIT License UpdatedJul 11, 2025 -
HiFi-16S-workflow Public
Forked from PacificBiosciences/HiFi-16S-workflowNextflow pipeline to analyze PacBio HiFi full-length 16S data
Nextflow BSD 3-Clause Clear License UpdatedJul 10, 2025 -
rnaseq Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Nextflow MIT License UpdatedJul 10, 2025 -
vcf2maf Public
Forked from mskcc/vcf2mafConvert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Perl Other UpdatedJul 10, 2025 -
raredisease Public
Forked from nf-core/rarediseaseCall and score variants from WGS/WES of rare disease patients.
Nextflow MIT License UpdatedJul 1, 2025 -
benson1231.github.io Public
Source code for my personal website built with React.
Jupyter Notebook UpdatedJun 25, 2025 -
jenkins-resources Public
Forked from ricardoandre97/jenkins-resourcesjenkins-training resources from ricardoandre97
Jinja UpdatedMar 23, 2025 -
NTU_Thesis_RNAseq Public archive
Scripts developed during my master’s program for RNA-seq analysis.
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NTU_methylation_analysis Public archive
Workflow and scripts for analyzing Illumina MethylationEPIC v2.0 array data using the sesame R package.
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NTU_scRNA-seq Public archive
scRNA-seq course materials and final project.
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NTU_transcriptomics_course Public archive
A collection of scripts and notes from my early practice in learning R programming.
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