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@bhklab

BHKLAB

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
README.md

Mission

Our overarching goal consists of developing cutting-edge computational tools and predictive models to identify new cancer vulnerabilities and improve the way precision oncology is delivered to patients.

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  1. PharmacoGx PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 72 26

  2. med-imagetools med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 56 10

  3. AnnotationGx AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    R 2 1

  4. readii readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    Jupyter Notebook 5

  5. orcestra-downloader orcestra-downloader Public

    Seamless CLI access to orcestra datasets

    Python 1

  6. handbook handbook Public

    Lab Handbook For BHKLab

    4

Repositories

Showing 10 of 233 repositories
  • bhklab-website Public

    BHK Lab website

    bhklab/bhklab-website’s past year of commit activity
    JavaScript 0 0 4 0 Updated Dec 16, 2025
  • hdd-data-pipeline Public

    Pipeline to create the Harmonized Drug Dataset (HDD)

    bhklab/hdd-data-pipeline’s past year of commit activity
    Python 0 0 2 0 Updated Dec 16, 2025
  • med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    bhklab/med-imagetools’s past year of commit activity
    Python 56 MIT 10 29 (1 issue needs help) 4 Updated Dec 16, 2025
  • circRNA-detection Public
    bhklab/circRNA-detection’s past year of commit activity
    R 0 0 0 0 Updated Dec 15, 2025
  • medsam2-inference Public
    bhklab/medsam2-inference’s past year of commit activity
    Python 0 0 2 1 Updated Dec 12, 2025
  • deep-drug-network-fusion Public

    DNF2

    bhklab/deep-drug-network-fusion’s past year of commit activity
    JavaScript 0 0 0 0 Updated Dec 11, 2025
  • bhklab-nninteractive Public

    bhklab-nnInteractive is a project which tests the nnInteractive medical image segmentation model using RECIST and RERECIST input prompts and evaluates its performance.

    bhklab/bhklab-nninteractive’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 11, 2025
  • recist-vs-reality Public

    Development of the AI-Augmented Response Assessment

    bhklab/recist-vs-reality’s past year of commit activity
    Jupyter Notebook 0 0 0 2 Updated Dec 11, 2025
  • bhklab-BiomedParse Public Forked from microsoft/BiomedParse

    BiomedParse: A Foundation Model for Joint Segmentation, Detection, and Recognition of Biomedical Objects Across Nine Modalities

    bhklab/bhklab-BiomedParse’s past year of commit activity
    Python 0 Apache-2.0 88 0 0 Updated Dec 11, 2025
  • ORCESTRA Public

    ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).

    bhklab/ORCESTRA’s past year of commit activity
    JavaScript 5 Apache-2.0 2 29 8 Updated Dec 10, 2025
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