non-reference transposable element detection using sTELLeR

A tool for discovering transposable elements and describing patterns of genome evolution

Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

Structural variation caller using third generation sequencing

Pre-mAsking Long reads for Mobile Element inseRtion

Find and characterise transposable element insertions

Python app to work with pictures and associated metadata from Apple Photos on macOS. Also includes a package to provide programmatic access to the Photos library, pictures, and metadata.

[On-CRAN][Active-Development] Setup a standalone Shiny application built with Electron to run as a Desktop application

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.

Earl Grey: A fully automated TE curation and annotation pipeline

Python CLI and library for any SDMX 2.1 REST API — Eurostat, ISTAT, OECD, ECB, World Bank and more. AI-ready.

This repository contains training material developed by the Microbial Ecology Group to introduce researchers to the R programming language for statistical analysis of metagenomic sequencing data.

The second version of the Kraken taxonomic sequence classification system

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

Methylation Phasing for Nanopore Sequencing

CLI tool for flexible and fast adaptive sampling on ONT sequencers

Comparison of multiple long read datasets

A *fast* tool for BAM/CRAM quality evaluation, intended for long reads

Plotting scripts for long read sequencing data

Tools for plotting methylation data in various ways

A tool for handling DNA methylation data in bedMethyl format

An R package to perform differential network analysis in single and multi-omic data. It can also be used for feature selection in ML.

An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters

Documentation repository for the DSpico flashcard

DS(i) rom loader.

An easy-to-use and interactive web application for FragPipe

A cross-platform proteomics data analysis suite

Dataset containing Neonatal Screening Observations of Lombardy region from september 2012 to december 2021

This repository aims to contain and share a series of scripts and notebooks that can be useful throughout the course of a single cell RNA sequencing analysis.