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Pull requests: biopython/biopython

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Pull requests list

Argument checking for MeltingTemp functions, closes #4865
#4866 opened Oct 9, 2024 by manulera Loading…
2 of 3 tasks
1
35
Mutation tool based on rotamers
#4855 opened Sep 23, 2024 by gerdos Loading…
3 tasks done
64
Add option to ignore DTD cache in Entrez Parser
#4853 opened Sep 21, 2024 by michaelfm1211 Loading…
3 tasks done
3
PDB structure query engine
#4782 opened Jul 29, 2024 by Will-Tyler Loading…
3 tasks done
4
Updating REBASE parser on Restriction Enzyme Dictionary creation script
#4685 opened Mar 30, 2024 by Rolando-at-Arzeda • Draft
3 tasks done
11
Feat/add bgzf typing
#4654 opened Mar 7, 2024 by bzoracler • Draft
3 tasks done
15
SSBond parsing addition - 2nd attempt
#4650 opened Mar 5, 2024 by suchanek Loading…
1 task
9
Add method to resolve polytomies in Phylo.BaseTree
#4634 opened Feb 23, 2024 by kbseah Loading…
3 tasks done
2
Allow qblast to accept lists of organisms to include/exclude
#4516 opened Nov 28, 2023 by netogallo Loading…
5
Non english months in pdb headers 4449
#4450 opened Sep 20, 2023 by exs-gbartlett Loading…
2 tasks done
1
14
bgzf: add utf-8 support
#4436 opened Sep 4, 2023 by ikravets Loading…
3 tasks done
1
9
No insertion codes with auth_residues=False
#4390 opened Jul 27, 2023 by speleo3 Loading…
3 tasks done
1
Re-enable MYSQL in GitHub Actions testing Testing
#4299 opened May 9, 2023 by peterjc Loading…
3 tasks done
6
MultipleSeqAlignment position mapping
#4249 opened Mar 1, 2023 by kamurani • Draft
1 of 3 tasks
1
3
feat(fuzzing): Adds fuzz harness for PDB.Superimposer
#4225 opened Feb 3, 2023 by nathaniel-brough Loading…
3 tasks done
feat(fuzzing): Add a fuzz test for the PDB parser
#4224 opened Feb 1, 2023 by nathaniel-brough Loading…
3 tasks done
9
Reimplement Bio.SeqUtils.ProtParam.flexibility as per literature
#4170 opened Nov 18, 2022 by Ruibin-Liu Loading…
3 tasks done
18
Support multi-line qualifier values
#4073 opened Sep 7, 2022 by v-raja Loading…
3 tasks done
5
Updates Bio.PDB.PSEA to run third-party tool in temporary directory
#4034 opened Aug 12, 2022 by sean-workman Loading…
2 of 3 tasks
1
1
Updates argument handling in PDBList
#4032 opened Aug 11, 2022 by sean-workman Loading…
2 of 3 tasks
24
Extracts information about the relative orientation of chains in oligomeric structures
#3984 opened Jul 15, 2022 by sachdved Loading…
@JoaoRodrigues
4
[WIP] improve error messages for invalid formats
#3926 opened May 11, 2022 by fabianegli Loading…
3 tasks done
22
Added support for LEON compressed fasta/fastq files.
#3919 opened May 2, 2022 by jdvne Loading…
3 tasks done
1
Handle line breaks in GenBank writer
#3911 opened Apr 25, 2022 by erik-whiting Loading…
3 tasks done
1
18
Fix broken reference in selected_child when copying a DisorderedAtom
#3897 opened Apr 6, 2022 by Bartvelp Loading…
3 tasks done
1
2
ProTip! Updated in the last three days: updated:>2025-11-06.