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Pull requests list

Remove links to PDF Tutorial (hasn't built for the last two releases)
#5095 by peterjc was merged Oct 29, 2025 Loading…
3 tasks done
1
1
Remove unused imports in test_AlignIO.py
#5094 by mdehoon was merged Oct 29, 2025 Loading…
3 tasks done
1
Remove unused import
#5093 by mdehoon was merged Oct 29, 2025 Loading…
1
Silence PDB warnings in tests (and fix name mix-up)
#5091 by peterjc was merged Oct 28, 2025 Loading…
3 tasks done
1
1
Silence test_GenBank.py invalid date warnings in test suite.
#5090 by mikeph52 was merged Oct 27, 2025 Loading…
3 tasks done
1
8
doc: Fix typo Thie -> This in fasta warning
#5089 by corneliusroemer was merged Oct 26, 2025 Loading…
3 tasks done
Silence warning in tests when a translation was not a multiple of 3
#5083 by peterjc was merged Oct 21, 2025 Loading…
3 tasks done
3
Fix flake8 F824 - unneeded globals
#5080 by peterjc was merged Oct 15, 2025 Loading…
3 tasks done
1
Permit mixed case for genbank export masking
#5079 by znruss was closed Oct 15, 2025 • Draft
2 of 3 tasks
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Test on Python 3.10 ~ 3.14
#5077 by peterjc was merged Oct 10, 2025 Loading…
3 tasks done
3
[pre-commit.ci] autoupdate
#5076 by pre-commit-ci bot was merged Oct 7, 2025 Loading…
2
Handle possible non-existent attributes in clusterbuster.py
#5074 by chenyenchung was merged Sep 27, 2025 Loading…
3 tasks done
6
SnapGene: Filter out partial binding sites.
#5071 by gouttegd was merged Oct 1, 2025 Loading…
2 of 3 tasks
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deprecating the SummaryInfo class in Bio.Align.AlignInfo
#5069 by mdehoon was merged Sep 21, 2025 Loading…
3 tasks done
1
removing deprecated code
#5068 by mdehoon was merged Sep 21, 2025 Loading…
3 tasks done
1
Fix F824 in Bio.PDB.vectors
#5067 by Mikel-MG was merged Sep 20, 2025 Loading…
3 tasks done
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4
Delete Tests/BWA/ test data.
#5066 by emollier was merged Sep 20, 2025 Loading…
2 tasks done
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Bump tj-actions/changed-files from 46 to 47 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#5065 by dependabot bot was merged Sep 21, 2025 Loading…
1
test_BWA_tool.py: update to bwa 0.7.19 header.
#5063 by emollier was closed Sep 13, 2025 Loading…
2 of 3 tasks
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Bump actions/setup-python from 5 to 6 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#5058 by dependabot bot was merged Sep 11, 2025 Loading…
1
added type annotations to most common oublic methods for Bio/Align, A…
#5057 by dimi1729 was closed Oct 26, 2025 Loading…
3 tasks done
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documentation tweaks
#5055 by mdehoon was merged Sep 4, 2025 Loading…
3 tasks done
1
Add C acceleration for melting temperature calculations
#5054 by rhowardstone was closed Oct 15, 2025 Loading…
6 tasks done
11
From pairwise alignments
#5051 by Cassiebastress was merged Oct 24, 2025 Loading…
3 tasks done
36
git commit -m "FEAT: Add AFDBList module and .gitignore for temp files"
#5050 by flyfir248 was closed Oct 8, 2025 Loading…
3 tasks done
1
5
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