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Pull requests list

Bio.Align chain avoid next() so we can use NamedTemporaryFile
#4945 by mdehoon was merged Feb 24, 2025 Loading…
3 tasks done
1
Issue 4940 - Loosen restriction of FormattedSeq._table in Restriction module
#4941 by manulera was merged Feb 19, 2025 Loading…
2 tasks done
1
5
Sphinx_rtd_theme update
#4939 by pem131 was merged Feb 20, 2025 Loading…
3 tasks done
1
4
Updated_pylab_to_pyplot_chapter_cookbook
#4937 by pem131 was merged Feb 13, 2025 Loading…
3 tasks done
5
Updated pylab to matplotlib.pyplot (chapter_cookbook.rst).
#4935 by pem131 was closed Feb 11, 2025 Loading…
3 tasks done
remove unused variable from test_PDB_KDTree.py
#4934 by mdehoon was merged Feb 13, 2025 Loading…
3 tasks done
1
PairwiseAligner attribute names
#4933 by mdehoon was merged Feb 10, 2025 Loading…
3 tasks done
1
wildcard argument in counts calculation
#4931 by mdehoon was merged Feb 7, 2025 Loading…
3 tasks done
1
update alignment documentation
#4930 by mdehoon was merged Feb 7, 2025 Loading…
3 tasks done
1
1
use ignore_sequences instead of gaps_only
#4929 by mdehoon was merged Feb 6, 2025 Loading…
3 tasks done
1
Adapting to changes in the copy keyword
#4927 by mdehoon was merged Feb 4, 2025 Loading…
3 tasks done
1
Generalize the counts attribute of an Alignment
#4924 by mdehoon was merged Feb 4, 2025 Loading…
3 tasks done
4
SeqIO don't do at runtime what can be done at compile time
#4919 by mdehoon was merged Jan 23, 2025 Loading…
3 tasks done
5
remove deprecated code from SeqRecord
#4917 by mdehoon was merged Jan 19, 2025 Loading…
3 tasks done
3
remove deprecated code from Bio.Seqfeature
#4916 by mdehoon was merged Jan 17, 2025 Loading…
3 tasks done
1
remove deprecated code from Bio.motifs
#4915 by mdehoon was merged Jan 17, 2025 Loading…
3 tasks done
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bugfix in alignment counts
#4914 by mdehoon was merged Jan 16, 2025 Loading…
3 tasks done
1
Update type annotation for Python 3.10 onwards
#4913 by peterjc was merged Jan 16, 2025 Loading…
3 tasks done
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Drop Python 3.9; focus tests on 3.10 and 3.13
#4912 by peterjc was merged Jan 15, 2025 Loading…
3 tasks done
3
fix table
#4910 by mdehoon was merged Jan 15, 2025 Loading…
3 tasks done
1
remove deprecated modules
#4909 by mdehoon was merged Jan 15, 2025 Loading…
3 tasks done
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remove deprecated functionality from Bio.Align.AlignInfo
#4907 by mdehoon was merged Jan 15, 2025 Loading…
3 tasks done
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Remove Bio.Application and modules relying on it.
#4906 by mdehoon was merged Jan 16, 2025 Loading…
3 tasks done
6
[pre-commit.ci] autoupdate
#4905 by pre-commit-ci bot was merged Jan 10, 2025 Loading…
1
GitHub actions CodeCov
#4904 by peterjc was merged Jan 5, 2025 Loading…
3 tasks done
1
9
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