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Pull requests: biopython/biopython

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Pull requests list

Make appveyor use conda-forge while updating
#4903 by flaar94 was merged Jan 3, 2025 Loading…
3 tasks done
Use .. code-block:: python in this docstring
#4902 by peterjc was merged Jan 1, 2025 Loading…
3 tasks done
Less aggressive origin-wrapping GenBank fix
#4901 by peterjc was merged Jan 3, 2025 Loading…
3 tasks done
Do not mention BAM when encountering an invalid bgzipped file
#4899 by marcelm was merged Dec 31, 2024 Loading…
3 tasks done
Rework doctest to avoid numpy 2.2 shape in repr
#4898 by peterjc was merged Dec 16, 2024 Loading…
3 tasks done
setup.py: don't error on setuptools 75.3.0.post0
#4897 by FliegendeWurst was merged Dec 16, 2024 Loading…
3 tasks done
Support Python 3.13
#4893 by bemibly was closed Dec 5, 2024 Loading…
3 tasks
Test on Python 3.13 on GitHub Actions
#4892 by peterjc was merged Dec 6, 2024 Loading…
3 tasks done
Avoid loading of doctest: use Bio._utils instead
#4891 by foxtran was merged Nov 25, 2024 Loading…
3 tasks done
add psiblast test
#4889 by mdehoon was merged Nov 21, 2024 Loading…
3 tasks done
Fix for #4886
#4887 by mdehoon was merged Nov 19, 2024 Loading…
3 tasks done
Address C compiler warnings
#4885 by michaelfm1211 was merged Nov 20, 2024 Loading…
3 tasks done
Make b_factor and occupancy in StructureBuilder init_atom() Optional
#4882 by BartoszJanuszNA was merged Nov 11, 2024 Loading…
3 tasks done
Enable multi-color output for 3D printed protein structures
#4877 by rob-miller was merged Oct 10, 2025 Loading…
3 tasks done
Add SearchIO.InfernalIO module
#4874 by drs was merged Mar 22, 2025 Loading…
3 tasks done
Introducing Biopython Guru on Gurubase.io
#4871 by kursataktas was closed Nov 27, 2024 Loading…
Try using GA setup-python's built in caching
#4864 by peterjc was closed Dec 31, 2024 Loading…
3 tasks done
[pre-commit.ci] autoupdate
#4863 by pre-commit-ci bot was merged Oct 8, 2024 Loading…
Bio.Align use mode consistently
#4858 by mdehoon was merged Sep 26, 2024 Loading…
3 tasks done
Bio.SeqIO uses subclassing in writers
#4857 by mdehoon was merged Dec 31, 2024 Loading…
3 tasks done
Bio.SeqIO remove unused variable
#4856 by mdehoon was merged Sep 24, 2024 Loading…
3 tasks done
Bio.SeqIO.NibIO use subclassing
#4854 by mdehoon was merged Sep 24, 2024 Loading…
3 tasks done
Update esummary_clinvar.dtd for fda_recognized_database
#4852 by michaelfm1211 was merged Sep 22, 2024 Loading…
3 tasks done
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