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Pull requests list

Align: add substitution matrix support to Alignment.format()
#5049 by RachelStern20 was merged Sep 4, 2025 Loading…
3 tasks done
1
20
fixes formatting for extremely high B-factor values
#5047 by OWissett was merged Sep 3, 2025 Loading…
3 tasks done
1
15
pairwisealigner pickle fix
#5041 by amitschang was merged Aug 19, 2025 Loading…
2 tasks done
1
6
typo
#5040 by mdehoon was merged Aug 12, 2025 Loading…
3 tasks done
1
Bump actions/checkout from 4 to 5 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#5039 by dependabot bot was merged Aug 17, 2025 Loading…
1
declare local functions as static
#5037 by mdehoon was merged Aug 11, 2025 Loading…
3 tasks done
3
Update docstrings in PAML modules
#5034 by twalsh-ebi was merged Jul 30, 2025 Loading…
3 tasks done
3
Prevent side-effect in SeqRecord._per_letter_annotations
#5031 by michaelfm1211 was merged Jul 24, 2025 Loading…
3 tasks done
1
7
Aligner default arguments
#5029 by mdehoon was merged Sep 16, 2025 Loading…
3 tasks done
1
5
Add paragraph about iplotx in Phylo tutorial
#5028 by iosonofabio was merged Oct 9, 2025 Loading…
3 tasks done
1
5
Update ci.yml and change windows-2019 to windows-2022
#5024 by JoaoRodrigues was merged Jul 3, 2025 Loading…
1
3
improved documentation and made fasta_align optional
#5021 by dimi1729 was merged Jul 3, 2025 Loading…
3 tasks done
1
22
Bio.Align._codonaligner Style change only
#5019 by mdehoon was merged Jun 21, 2025 Loading…
3 tasks done
1
Make PDB.Chain.__getitem__ more lenient for indexing with int-like values
#5018 by kamurani was merged Sep 29, 2025 Loading…
3 tasks done
1
12
follow recommended style for PyTypeObject
#5014 by mdehoon was merged Jun 20, 2025 Loading…
3 tasks done
1
Extend the .counts method of an Alignment
#5011 by mdehoon was merged Jul 11, 2025 Loading…
3 tasks done
19
miniconda -> miniforge for AppVeyor
#5010 by peterjc was merged Jun 17, 2025 Loading…
3 tasks done
1
Fix QCPSuperimposer bug
#5005 by paajasan was merged Jun 9, 2025 Loading…
3 tasks done
1
5
Added Documentation to CEAlign and QCPSuperimposer
#5002 by dimi1729 was merged Jun 9, 2025 Loading…
3 tasks done
1
9
Uniprotxml parse ligand tag
#5001 by irahorecka was merged May 30, 2025 Loading…
3 tasks done
1
9
improved error handling, should not show misleading message
#4998 by lee-t was merged May 29, 2025 Loading…
3 tasks done
1
11
Add more ways to translate nucleotide sequence with dashes
#4992 by mmokrejs was closed Jul 11, 2025 Loading…
3 tasks done
25
[pre-commit.ci] autoupdate
#4986 by pre-commit-ci bot was merged Jul 11, 2025 Loading…
4
Fix/seq feature fromstring
#4984 by FynnFreyer was merged Mar 28, 2025 Loading…
3 tasks done
1
9
use PyOS_double_to_string to prevent locale-specific behavior
#4982 by mdehoon was merged Mar 26, 2025 Loading…
3 tasks done
1
1
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