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Pull requests: biopython/biopython

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Pull requests list

chore: add type annotation to Bio/File.py
#5088 opened Oct 24, 2025 by szabgab Loading…
3 tasks done
5
Add type annotations
#5087 opened Oct 24, 2025 by szabgab Loading…
12
Complete C acceleration for melting temperature calculations
#5085 opened Oct 15, 2025 by rhowardstone Loading…
8 tasks done
5
Minor style tweaks from ruff v0.11.10 then black 25.9.0
#5084 opened Oct 15, 2025 by peterjc Loading…
3 tasks done
1
Add __next__ method to FastaTwoLineIterator
#5078 opened Oct 13, 2025 by vihaankulkarni29 Loading…
3
Add support for terminal_columns in Alignment formatting, issue 5035
#5070 opened Sep 19, 2025 by data2code Loading…
1 task
1
30
Fix typo/bug in biopython.Bio.PDB.vectors vector_to_axis
#5045 opened Aug 26, 2025 by Mikel-MG Loading…
3 tasks done
4
Added subpopulation function and validation logic
#5042 opened Aug 16, 2025 by timlee-bioinf Loading…
3 tasks
@tiagoantao
1
Add SeqIO read/write support for NCBI 5-column tab-delimited feature tables
#5032 opened Jul 21, 2025 by michaelfm1211 • Draft
3 tasks done
1
3
Replaced print with warn/stderrs in NCBIXML.py
#5030 opened Jul 17, 2025 by head-ease08 Loading…
3 tasks done
1
11
Add option to ignore N-/C-terminus effects in isoelectric point calculation
#5022 opened Jun 27, 2025 by FriedLabJHU Loading…
1 task
2
Accelerated motif search algorithms on dna sequences
#5016 opened Jun 19, 2025 by quim6 Loading…
3 tasks done
8
Remove deprecated Bio.HMM
#5009 opened Jun 17, 2025 by peterjc Loading…
3 tasks done
7
Code-visualization for the biopython codebase
#5008 opened Jun 16, 2025 by ivanmilevtues Loading…
3 tasks done
5
types - add a script that tracks the progress of typed API surface
#5003 opened Jun 3, 2025 by refack Loading…
2 of 3 tasks
Use default gap='-' in translate function to match Seq method
#4994 opened May 8, 2025 by peterjc Loading…
3 tasks done
2
fix model_n
#4991 opened Apr 29, 2025 by jamesmkrieger Loading…
3 tasks done
3
altered behaviour to account for existing degenerate nucleotides
#4990 opened Apr 25, 2025 by bmichanderson Loading…
2 of 3 tasks
1
2
include test outputs in gitignore
#4942 opened Feb 18, 2025 by manulera Loading…
2 tasks done
5
Deprecate MMTF in PDBList, add BinaryCIF support
#4938 opened Feb 13, 2025 by Will-Tyler Loading…
3 tasks done
1
Add cif-seqres-author and cif-atom-label seq parsers
#4928 opened Feb 4, 2025 by StefansM • Draft
3 tasks
Allow NA as a valid molecule type in GenBank files
#4918 opened Jan 20, 2025 by erik-whiting Loading…
3 tasks done
1
3
Melting Temp Efficiency Improvements
#4875 opened Oct 27, 2024 by flaar94 • Draft
3 tasks done
1
Native BAM parsing
#4869 opened Oct 11, 2024 by flaar94 • Draft
3 tasks done
1
Argument checking for MeltingTemp functions, closes #4865
#4866 opened Oct 9, 2024 by manulera Loading…
2 of 3 tasks
1
35
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