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Pull requests: biopython/biopython

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Pull requests list

Wrap SCOP2 REST API
#2582 opened Jan 27, 2020 by bganglia Loading…
3 tasks done
7
Fix bug in _prim() to deal with codons [3 letters]
#2301 opened Oct 15, 2019 by izabelcavassim Loading…
3 tasks done
7
Minimal SeqIO support for parsing and writing NCBI TinySeq XML Enhancement
#2275 opened Sep 18, 2019 by peterjc Loading…
3 tasks done
4
Fix GenomeDiagram division by zero Error & some flake8 style
#2182 opened Jul 23, 2019 by sssxie Loading…
3 tasks done
@widdowquinn
9
Cope with missing training set in MEME
#1958 opened Mar 14, 2019 by jclachance Loading…
3 tasks done
15
Solves calc_dihedral function from Bio.PDB.vectors (deals with angle sign correctly)
#1950 opened Mar 5, 2019 by hypnopump Loading…
3 tasks done
1
Update test_PDB_StructureAlignment.py
#1881 opened Dec 21, 2018 by konqr Loading…
1 task
9
Strict four line FASTQ parser
#1864 opened Nov 27, 2018 by DevangThakkar Loading…
3 tasks done
34
New module below SeqUtils with GC-content related functions
#1829 opened Oct 12, 2018 by dzarmola Loading…
3 tasks done
16
MMCIFIO.set_structure KeyError for pdb_object.level=="R" with chain!='A'
#1786 opened Sep 6, 2018 by Bernhard10 Loading…
3 tasks done
11
Seq slice with feature
#1771 opened Aug 27, 2018 by SchwarzMarek Loading…
3
Iterative parsing for EMBOSS PrimerSearch
#1752 opened Aug 10, 2018 by rtf-const Loading…
3 tasks done
9
nRCA support in SeqUtils CodonUsage Enhancement
#1692 opened Jun 19, 2018 by ivanerill Loading…
6
Updated NCBIWWW.qblast and test_NCBI_qblast.py
#1513 opened Jan 22, 2018 by yangwu91 Loading…
16
Split out UPGMA and WPGMA
#1506 opened Jan 15, 2018 by stuckmke Loading…
5
EBIsearch integration
#1398 opened Sep 26, 2017 by Gasta88 Loading…
29
Move self-test for Bio.PDB.PSEA
#1336 opened Jul 21, 2017 by souravsingh Loading…
24
Add CATHDB API support
#1258 opened May 26, 2017 by saketkc Loading…
6
Update test_NCBIXML.py
#1087 opened Mar 8, 2017 by Gasta88 Loading…
1
26
Return FASTQ and SFF quality scores as an array (RFC, WIP)
#1057 opened Feb 10, 2017 by peterjc Loading…
12
Parsing value-less qualifiers in EMBL/GenBank like /pseudo
#905 opened Aug 2, 2016 by peterjc Loading…
1
2
reading/writing Stockholm alignment GF and GC annotation
#769 opened Feb 11, 2016 by frubino Loading…
14
Created function stripping evidence codes from SwissProt dat
#762 opened Jan 27, 2016 by lpryszcz Loading…
7
Added 'simple_consensus' as a modification of 'dumb_consensus' with tests
#727 opened Dec 14, 2015 by fjossandon Loading…
3
Adding fixes and methods to TreeConstruction
#629 opened Oct 7, 2015 by jwillis0720 Loading…
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