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Pull requests: biopython/biopython

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Pull requests list

Supporting LINK and SSBOND lines from PDB files
#3858 opened Feb 9, 2022 by markf94 Loading…
3 tasks done
9
Support PDB charges in Atom class
#3857 opened Feb 9, 2022 by markf94 Loading…
3 tasks done
1
9
Parsing PHYLIP distance matrices
#3836 opened Jan 6, 2022 by peterjc Loading…
3 tasks done
1
3
Adding ability to calculate the isoelectric point by 18 methods.
#3819 opened Dec 5, 2021 by lukasz-kozlowski Loading…
7
HSExposure: Allow skipping residues with missing HSE-relevant atoms
#3812 opened Nov 30, 2021 by dominiquesydow Loading…
3 tasks done
1
@JoaoRodrigues
Add KEGG.Compound.Record.raw
#3778 opened Nov 4, 2021 by speleo3 Loading…
3 tasks done
13
Draw tree with different orientations in Phylo/__utils.py
#3693 opened Aug 13, 2021 by R-Wright-1 Loading…
3 tasks done
3
Pdb residue string
#3676 opened Jul 30, 2021 by rob-miller Loading…
3 tasks done
@JoaoRodrigues
14
Add title, xlabel and ylable to draw function in Bio/Phylo/_utils.py
#3632 opened Jun 21, 2021 by yhlhhhhh Loading…
3 tasks done
5
ensure SeqRecord.features is a list of SeqFeatures
#3599 opened Jun 9, 2021 by fabianegli Loading…
3 of 4 tasks
13
add 'i' lines in MafIO
#3586 opened Jun 4, 2021 by lldelisle Loading…
3 tasks done
21
Replace accession by locus id in EMBL header line
#3572 opened Jun 1, 2021 by oschwengers Loading…
3 tasks done
3
Bug fix in DisorderedAtom object copying
#3536 opened Apr 28, 2021 by iriziotis Loading…
3 tasks done
4
Crosslinks for features on same track in circular GenomeDiagram
#3520 opened Apr 2, 2021 by esthivdw Loading…
1 task
2
PDB.read() function with automatic handling of gzipped files Enhancement
#3499 opened Mar 10, 2021 by duerrsimon Loading…
3 tasks done
1
@JoaoRodrigues
76
Reverse chronological sorting in DEPRECATED file
#3343 opened Nov 10, 2020 by peterjc Loading…
3 tasks done
7
SeqAnalysis module for proteins data analysis and visualization
#3124 opened Jul 23, 2020 by moozeq Loading…
3 tasks done
2
Change chained .replace() calls with str.translate() for performance
#3025 opened Jul 3, 2020 by chris-rands Loading…
3 tasks done
15
Iterative implementation for newickize
#3022 opened Jul 2, 2020 by ttung Loading…
3 tasks done
15
Fix Newick and Nexus write for comments and internally named nodes
#3016 opened Jun 29, 2020 by ktmeaton Loading…
3 tasks done
4
fixed bugs, added mcmc input, added maximum_clade_probability_consens…
#2956 opened Jun 4, 2020 by jrozycka Loading…
3 tasks
2
Phylo interface to ete3
#2887 opened May 13, 2020 by saiteki-kai Loading…
2 of 3 tasks
7
tinchogb-PDBList-handle-compression
#2850 opened Apr 25, 2020 by tinchogb Loading…
3 tasks done
9
new FASTA parser; better sequence cross-referencing support; APIs for fetching sequences
#2815 opened Mar 23, 2020 by TianyiShi2001 Loading…
3 tasks done
17
fix: padding search in CELv4 files
#2681 opened Feb 10, 2020 by wwydmanski Loading…
7
ProTip! Adding no:label will show everything without a label.