Mattermost is an open source platform for secure collaboration across the entire software development lifecycle..

👩‍🚒 Good content deserves good paper.

Library for reducing tail latency in RAM reads

Turn complex codebases into clear, navigable architecture diagrams with Claude Code.

AI coding assistant skill (Claude Code, Codex, OpenCode, Cursor, Gemini CLI, GitHub Copilot CLI, OpenClaw, Factory Droid, Trae, Google Antigravity). Turn any folder of code, docs, papers, images, o…

🎨 NeMo Data Designer: Generate high-quality synthetic data from scratch or from seed data.

Index kmtricks bf matrices

Scripts used in the paper in Genes, Genomes and Genetics by Miranda-Rodriguez et al. 2025

Fast, SIMD-accelerated, multi-set seeding algorithm for error-prone sequences

Production ready toolkit to run AI locally

Fast, alignment-free genome completeness estimator

PyGraphistry is a Python library to quickly load, shape, embed, and explore big graphs with the GPU-accelerated Graphistry visual graph analyzer

A scientific plotting library in Rust

Official repository of the 2025 paper, LLM Economist: Large Population Models and Mechanism Design in Multi-Agent Generative Simulacra.

Tool for drawing gene structures from genome annotation files.

GEOfinder, a Web application to support finding datasets in Gene Expression Omnibus

Structured RAG: ingest, index, query

GitHub Copilot CLI brings the power of Copilot coding agent directly to your terminal.

GitNexus: The Zero-Server Code Intelligence Engine - GitNexus is a client-side knowledge graph creator that runs entirely in your browser. Drop in a GitHub repo or ZIP file, and get an interactive …

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

A rust implementation of STAR

A Comparative Genomics Framework Integrating Synteny Visualization

Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men

An ultra-fast and accurate tool for KEGG Orthology (KO) assignment, powered by deep learning.

A Snakemake pipeline for Xenium data analysis.

Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data.

A geometric foundation model for enzyme retrieval with evolutionary insights.

Interactive 3D visualization of knowledge graphs generated by Microsoft GraphRAG. Explore entities, relationships, and communities with immersive visual analytics.