Starred repositories
Library for reducing tail latency in RAM reads
Turn complex codebases into clear, navigable architecture diagrams with Claude Code.
AI coding assistant skill (Claude Code, Codex, OpenCode, Cursor, Gemini CLI, OpenClaw, Factory Droid, Trae). Turn any folder of code, docs, papers, or images into a queryable knowledge graph
🎨 NeMo Data Designer: Generate high-quality synthetic data from scratch or from seed data.
Scripts used in the paper in Genes, Genomes and Genetics by Miranda-Rodriguez et al. 2025
Fast, SIMD-accelerated, multi-set seeding algorithm for error-prone sequences
Production ready toolkit to run AI locally
PyGraphistry is a Python library to quickly load, shape, embed, and explore big graphs with the GPU-accelerated Graphistry visual graph analyzer
Official repository of the 2025 paper, LLM Economist: Large Population Models and Mechanism Design in Multi-Agent Generative Simulacra.
Tool for drawing gene structures from genome annotation files.
srp33 / GEOfinder3.0
Forked from abbymuir47/GEOfinder3.0GEOfinder, a Web application to support finding datasets in Gene Expression Omnibus
GitHub Copilot CLI brings the power of Copilot coding agent directly to your terminal.
GitNexus: The Zero-Server Code Intelligence Engine - GitNexus is a client-side knowledge graph creator that runs entirely in your browser. Drop in a GitHub repo or ZIP file, and get an interactive …
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
A Comparative Genomics Framework Integrating Synteny Visualization
Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men
An ultra-fast and accurate tool for KEGG Orthology (KO) assignment, powered by deep learning.
A Snakemake pipeline for Xenium data analysis.
Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data.
A geometric foundation model for enzyme retrieval with evolutionary insights.
Interactive 3D visualization of knowledge graphs generated by Microsoft GraphRAG. Explore entities, relationships, and communities with immersive visual analytics.