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5 stars written in Java
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ome / bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Pub…

Java 408 250 Updated Dec 11, 2025

clij / clij

CLIJ is deprecated. Visit CLIJ2

Java 56 9 Updated Jun 12, 2021

PRNicovich / NicoLase

Open-source diode laser combiner, fiber launch, and sequencing controller for fluorescence microscopy

Java 53 9 Updated Dec 21, 2020

tferr / Scripts

🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

Java 25 18 Updated Jun 3, 2022

UU-cellbiology / DoM_Utrecht

Detection of Molecules plugin for ImageJ: SMLM 2D/3D localizations, drift and chromatic aberration correction, etc

Java 15 4 Updated Nov 16, 2022