GPU-accelerated chemically specific chromatin model

Python Code Editor in PyQt5

napari plugin to open CZI image files and their metadata

andi_datasets provides functions to generate, save, load and manipulate datasets of diffusion anomalous trajectories. It is part of the Anomalous Diffusion (ANDI) Challenge.

An infinitely extensible and reusable application framework for data science.

The open-source CapCut alternative

Implement a ChatGPT-like LLM in PyTorch from scratch, step by step

Arduino FOC for BLDC and Stepper motors - Arduino Based Field Oriented Control Algorithm Library

Read and write TIFF files.

Language notes for Obsidian.md

Lecture notes and code for the course PHYS6350 Computational Physics at the University of Houston

Simple Qt/Python based viewer for HDF5 files

High Performance Data Processing in Python

Simple, fast-loading, n-dimensional array viewer with minimal dependencies.

Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.

The Bluesky Social application for Web, iOS, and Android

Step finding based HMM

data analysis and fitting software for fluorescence correlation spectroscopy (FCS)

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

A library of free open source icons for science illustrations in biology and chemistry

membrane segmentation in 3D for cryo-ET

BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.

Notebooks used in scvi-tools tutorials

😎 curated list of open source photonics projects

Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more

Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets

Cloud-based molecular simulations for everyone

Jupyter-friendly Python interface for C++ MINUIT2