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qcCheckeR Public
A Shiny application for quality control and exploratory analysis of RNA-Seq data. QC-CheckeR provides an interactive interface for metadata editing, sample management, and PCA visualization using D…
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nextflow Public
nextflow RNAseq pipeline for GG02
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gihub-website Public
netlify repository for genomics innovation hub website
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wgs Public
nextflow init for wgs modules
Nextflow GNU General Public License v3.0 UpdatedOct 18, 2025 -
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metatdenovo Public
Forked from nf-core/metatdenovoAssembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Nextflow MIT License UpdatedJul 23, 2025 -
scutils Public
utility functions for single cell + pseudobulk analyses
R MIT License UpdatedJul 2, 2025 -
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atac Public
nextflow ATACseq pipeline for GG02
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TReX Public
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @Cornell-Trex
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scRNA-WS24 Public
Exercises for scRNA-seq Workshop TREX x BioHPC 2024.
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quarto-deseq2-summary Public
quarto dashboard for SAR-Tools TREx summary
JavaScript MIT License UpdatedJan 18, 2024 -
quarto-web Public
Forked from quarto-dev/quarto-webQuarto website
JavaScript Other UpdatedNov 7, 2023 -
DESeq2Shiny2 Public
DESeq2Shiny2 is an R shiny application to handle NGS count data and perform unsupervised clustering and Differential Gene Expression Analysis using DESeq2.
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SARTools1.6.6 Public
Forked from PF2-pasteur-fr/SARToolsStatistical Analysis of RNA-Seq Tools
R UpdatedMay 23, 2023 -
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