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A full stack web app for differential expression analysis, powered by DESeq2. Upload a count matrix, define experimental contrasts, and explore results through interactive visualizations — all in t…
A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.
🦖 ClawBio — The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.
Curated list of project-based tutorials
A Shiny application for quality control and exploratory analysis of RNA-Seq data. QC-CheckeR provides an interactive interface for metadata editing, sample management, and PCA visualization using D…
Accelerated genomics workflows in NextFlow
A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessible.
Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial data in an easy and efficient way.
Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
Framework for sensitive DE testing (using neighbourhoods)
RStudio Server in a Singularity container
Deep probabilistic analysis of single-cell and spatial omics data
The statistical language R compiled to WebAssembly via Emscripten, for use in web browsers and Node.
A curated collection of Nextflow implementation patterns
Interpretation of cell states using reference single-cell maps
Assertive programming for R analysis pipelines
An interactive explorer for single-cell transcriptomics data
A toolkit for QC and visualization of ATAC-seq results.
R package implementation of Milo for testing for differential abundance in KNN graphs