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@blab

Bedford Lab

Viruses, evolution and immunity at Fred Hutch.

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  1. nextflu nextflu Public

    Real-time tracking of influenza evolution

    JavaScript 88 19

  2. blotter blotter Public

    bedford lab research

    HTML 67 93

  3. global-migration global-migration Public

    Analysis of global migration patterns of seasonal influenza viruses

    Mathematica 22

  4. baltic baltic Public

    Forked from evogytis/baltic

    baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is g…

    Jupyter Notebook 12 6

  5. siv-cst siv-cst Public

    Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission

    Jupyter Notebook 6 2

  6. zika-seq zika-seq Public

    Pipelines to do MinION sequencing of Zika virus

    Python 15 3

Repositories

Showing 10 of 104 repositories
  • phylogeo-signal Public

    Ability to characterise transmission between population groups from sequence data

    blab/phylogeo-signal’s past year of commit activity
    0 MIT 0 0 0 Updated Feb 28, 2025
  • adaptive-evolution Public

    An atlas of continuous adaptive evolution in endemic human viruses

    blab/adaptive-evolution’s past year of commit activity
    Jupyter Notebook 4 0 0 0 Updated Feb 27, 2025
  • mpox-la Public
    blab/mpox-la’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 21, 2025
  • blotter Public

    bedford lab research

    blab/blotter’s past year of commit activity
    HTML 67 93 2 0 Updated Feb 20, 2025
  • fitness-flux Public

    Fitness dynamics of SARS-CoV-2 and seasonal influenza H3N2

    blab/fitness-flux’s past year of commit activity
    Mathematica 1 1 0 1 Updated Feb 14, 2025
  • phylo-kernel-public Public

    Code and data for: "Fine-scale patterns of SARS-CoV-2 spread from identical pathogen sequences".

    blab/phylo-kernel-public’s past year of commit activity
    R 0 MIT 0 0 0 Updated Feb 7, 2025
  • relative-fitness-mechanisms Public

    Frequency dynamics predict viral fitness, antigenic relationships and epidemic growth

    blab/relative-fitness-mechanisms’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jan 27, 2025
  • ncov-escape Public Forked from nextstrain/ncov

    Predicting changes in lineage fitness from phenotypic predictors

    blab/ncov-escape’s past year of commit activity
    Jupyter Notebook 0 MIT 413 0 0 Updated Dec 24, 2024
  • evofr Public

    Tools for evolutionary forecasting

    blab/evofr’s past year of commit activity
    Jupyter Notebook 7 AGPL-3.0 1 5 0 Updated Dec 17, 2024
  • ncov-usa-mig Public

    Analysis of SARS-CoV-2 Surveillance Sequences Across the United States

    blab/ncov-usa-mig’s past year of commit activity
    HTML 1 0 0 0 Updated Dec 3, 2024
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