Skip to content

Update ISC permutation doc to clarify pairwise groups #476

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
mihaic merged 7 commits into from
Sep 2, 2020
+2 −2
Merged

Update ISC permutation doc to clarify pairwise groups #476

Changes from all commits
Commits
Show all changes
7 commits
Select commit Hold shift + click to select a range
0593ca4
Fix pairwise bootstrap to tolerate NaNs
snastase Jul 31, 2020
a721dde
Remove extraneous try/except error message (oops)
snastase Jul 31, 2020
8e557d4
Update ISC permutation doc on pairwise groups clarity
snastase Jul 31, 2020
f7514b4
Fix tense in permutation_isc documentation
snastase Aug 11, 2020
bffeb49
Merge branch 'master' into 2samp-perm-doc
snastase Aug 16, 2020
3f68a9f
Merge branch 'master' into 2samp-perm-doc
mihaic Aug 17, 2020
b3e6401
Merge branch 'master' into 2samp-perm-doc
mihaic Sep 1, 2020
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions brainiak/isc.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1067,8 +1067,8 @@ def permutation_isc(iscs, group_assignment=None, pairwise=False, # noqa: C901
leave-one-out approach, ISC values for two groups should be stacked
along first dimension (vertically) and a group_assignment list (or 1d
array) of same length as the number of subjects should be provided to
indicate groups. In the pairwise approach, pairwise ISCs should be
computed the across both groups at once; i.e. the pairwise ISC matrix
indicate groups. In the pairwise approach, pairwise ISCs should have
been computed across both groups at once; i.e. the pairwise ISC matrix
should be shaped N x N where N is the total number of subjects across
both groups, and should contain between-group ISC pairs. Pairwise ISC
input should correspond to the vectorized upper triangle of the square
Expand Down