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2D expansion to IEM module #482

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Merged
mihaic merged 40 commits into from
Oct 13, 2020
Merged

2D expansion to IEM module #482

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3005d8d
renamed main module to be 1D; started 2D module
vyaivo Sep 29, 2020
a8f8dba
finish refactoring for renamed 1D IEM
vyaivo Sep 29, 2020
9a407f3
adding channel_limits to init input
vyaivo Sep 29, 2020
414abdb
updated _define_trial_activations to create 2D stimulus mask (assumin…
vyaivo Sep 30, 2020
ec783ac
added channel_exp in init. fixed reference to FWHM to cossz function.…
vyaivo Sep 30, 2020
7545f2b
modified function to create stimulus mask + channel activation matrix
vyaivo Sep 30, 2020
3141f2d
adding initial parts of a 2D IEM notebook
vyaivo Sep 30, 2020
9657db2
fixed dimensionality issues with basis functions and trial activations
vyaivo Sep 30, 2020
35d128c
forced _make_2d_cosine() to return a numpy array. Updated score() fun…
vyaivo Sep 30, 2020
7d6fb86
added parameter checks; updated get & set functions
vyaivo Sep 30, 2020
df212c0
added documentation & renamed size constant variable in 2d_cosine fun…
vyaivo Sep 30, 2020
6f9783b
fixed fwhm to cosine sz functions (off by a factor of 2).
vyaivo Sep 30, 2020
5269b29
minor changes to user docs + comments
vyaivo Oct 1, 2020
05b2d02
initial version of notebook with IEM tutorial data (2d spatial recons)
vyaivo Oct 1, 2020
56d4957
removed unnecessary bits in the notebook. added TODOs for the text
vyaivo Oct 1, 2020
3057edf
resolving TODOs with suggestions from JA, with some edits
vyaivo Oct 2, 2020
0e9b8d3
adding parameter checks and corresponding tests. still need to finish…
vyaivo Oct 7, 2020
5984dc4
fixed docstrings
vyaivo Oct 7, 2020
3618223
tests on stimulus resolution & custom channel definition
vyaivo Oct 7, 2020
63be22e
added to check_params()
vyaivo Oct 7, 2020
f64fcfc
expanded 2D tests; reorganized the rest
vyaivo Oct 7, 2020
c01e3c1
pytest now runs. added 2d FOV check
vyaivo Oct 8, 2020
e20e475
adding circ_dist to __all__
vyaivo Oct 8, 2020
d664e9b
added dummy data for 2d IEM & several accompanying tests
vyaivo Oct 8, 2020
0441f89
fixed PEP8 issues and docstrings
vyaivo Oct 8, 2020
63c7dde
fixing more PEP8 issues
vyaivo Oct 8, 2020
d3e2d87
fixed docstrings throughout, including class docstring. Changed defau…
vyaivo Oct 9, 2020
a9c9f2b
fixed scoring function and added another scoring option
vyaivo Oct 9, 2020
e67df0a
added tests to cover defined or undefined stimulus radius and design …
vyaivo Oct 9, 2020
4a3de32
PEP8 formatting
vyaivo Oct 9, 2020
2bf83c5
added tests for helper functions + functions to define grid of channels
vyaivo Oct 10, 2020
a9103df
Merge branch 'master' into iem-2d
vyaivo Oct 10, 2020
8c24a2a
removing unnecessary tests
vyaivo Oct 10, 2020
5d0704b
added tests for singular or low rank matrices across all steps of the…
vyaivo Oct 10, 2020
baf4111
fixed pytest check for RuntimeWarning. Removed randomness in sqgrid t…
vyaivo Oct 10, 2020
bf813c3
fixed numerical issues in size conversion tests. added matrix rank as…
vyaivo Oct 10, 2020
ef53702
added copyright & licensing for Intel
vyaivo Oct 12, 2020
6f01c03
added input parameter details in InvertedEncoding2D init. Fixed other…
vyaivo Oct 12, 2020
930b380
Added detail about different scoring functions. Removed whitespace.
vyaivo Oct 13, 2020
be66aca
More complete attribution to dataset / IEM tutorial authors. Clarifie…
vyaivo Oct 13, 2020
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