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upsetFraction Public
upset plot with fractional representation in the matrix dots
R BSD 3-Clause "New" or "Revised" License UpdatedSep 13, 2025 -
HAASLIB Public
my collection of perl modules that I share among lots of different toolkits
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Mandalorion Public
Forked from christopher-vollmers/MandalorionPipeline to identify isoforms from full-length cDNA sequencing data
Python MIT License UpdatedJan 25, 2025 -
ssw-py Public
Forked from libnano/ssw-pyStriped Smith Waterman (SSW) SIMD sequence aligner for Python
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LeidenClusteringSimple Public
simple code for clustering paired data based on Leiden
Python UpdatedDec 16, 2023 -
SLCLUST Public
single linkage clustering utility with jaccard coeff to split up loosely connected clusters
C++ BSD 3-Clause "New" or "Revised" License UpdatedDec 16, 2023 -
calc_PR_AUC Public
calculate precision-recall AUC via non-linear interpolation
Python UpdatedNov 30, 2023 -
pfb2023 Public
Forked from prog4biol/pfb2023Programming for Biology @ CSHL 2023
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PingplotterByChatgpt Public
Network ping latency checker GUI written by chatgpt
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scIsoPrep Public
Forked from cbg-ethz/scIsoPrepSingle-cell Iso Prep
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igv-reports Public
Forked from igvteam/igv-reportsPython application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.
Python MIT License UpdatedSep 16, 2023 -
mas-seq-paper-data-bjh Public
Forked from broadinstitute/mas-seq-paper-dataData and additional information from the initial MAS-ISO-seq study, "High-throughput RNA isoform sequencing using programmable cDNA concatenation"
Jupyter Notebook UpdatedAug 17, 2023 -
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ShrinkGenome Public
Shrink a large genome down to predefined functional regions
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genomeview Public
Forked from nspies/genomeviewAn extensible python-based genomics visualization engine
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open-cravat Public
Forked from KarchinLab/open-cravatA modular annotation tool for genomic variants
JavaScript GNU General Public License v3.0 UpdatedJul 16, 2020 -
infercnv Public
Forked from broadinstitute/infercnvInferring CNV from Single-Cell RNA-Seq
R Other UpdatedFeb 25, 2020 -
HoneyBADGER Public
Forked from JEFworks-Lab/HoneyBADGERHMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
R GNU General Public License v3.0 UpdatedFeb 14, 2020 -
indrops Public
Forked from indrops/indropsPipeline for processing inDrops sequencing data (FORKED FROM ORIGINAL)
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SmartRNASeqCaller Public
Forked from inab/SmartRNASeqCallerSmartRNASeqCaller is a post-processing pipeline to improve germline variant calling from RNA-Seq data
Python GNU Lesser General Public License v3.0 UpdatedSep 7, 2019 -
UpSetR Public
Forked from hms-dbmi/UpSetRAn R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
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starchip Public
Forked from LosicLab/starchipDetection of Circular RNA and Fusions from RNA-Seq
Perl MIT License UpdatedApr 18, 2019
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