Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

Record the CPU and memory activity of a process 📈

A fast approximate aligner for long DNA sequences

SymSpell: 1 million times faster spelling correction & fuzzy search through Symmetric Delete spelling correction algorithm

tools for working with genome variation graphs

Emacs configuration for Rust

Long read production pipelines

Statistical Rethinking Course Winter 2020/2021

A large set of JAGS examples using R

WDL (Workflow Description Language) major mode

Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omics Analysis

A list of deep learning implementations in biology

A next-generation curated knowledge sharing platform for data scientists and other technical professions.

Lecture notes and example code for teaching C & C++

RNA-seq aligner

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs

HSCI/Catalyst Single-cell RNA-Seq Workshop

Response to blog post about Salmon

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…

Global alignment and alignment extension

SCGV is an interactive graphical tool for single-cell genomics data, with emphasis on single-cell genomics of cancer

Python interface for SIMD Smith-Waterman Library

Perceptions of Probability and Numbers

JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

Web application for enormous biological heatmaps

Microassembly based somatic variant caller for NGS data

Rails/Docker application for the Broad Institute's single cell RNA-seq data portal