Stars
A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data
Clustering, visualising and exploring plasmid networks
Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
Alignment and variant-calling pipeline for Illumina HIV sequences.
Free LUTs for Panasonic Lumix Vlog color grading
A powerful cross-platform raw photo processing program
This repository contains simulated datasets and scripts used for the research paper titled "Pangenome Graphs in Infectious Disease: A Promising and Practical Implementation for Comprehensive Geneti…
VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.
Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
Tool to plot synteny and structural rearrangements between genomes
In-depth characterization and annotation of differences between two sets of DNA sequences
Carbapenemase-encoding gene copy number estimator
A flexible pipeline for complete analysis of bacterial genomes
Phylogenetics between and within hosts at once, all along the genome.