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Quick mapping of Uniprot sequences to PDB structures

Python 36 4 Updated Apr 1, 2025

How to analyze molecular dynamics data with PyEMMA

Jupyter Notebook 88 34 Updated May 29, 2019

Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation

Python 871 88 Updated Mar 30, 2026

Foldseek enables fast and sensitive comparisons of large structure sets.

C 1,249 153 Updated May 13, 2026
Jupyter Notebook 18 1 Updated Aug 28, 2023

🚂 Python API for Emma's Markov Model Algorithms 🚂

Python 339 126 Updated Sep 11, 2023

Code for running RFdiffusion

Python 2,918 623 Updated Apr 24, 2026
Jupyter Notebook 5 1 Updated Jun 11, 2021