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Quick mapping of Uniprot sequences to PDB structures

Python 36 4 Updated Apr 1, 2025

How to analyze molecular dynamics data with PyEMMA

Jupyter Notebook 81 34 Updated May 29, 2019

Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation

Python 842 86 Updated Apr 11, 2025

Foldseek enables fast and sensitive comparisons of large structure sets.

C 1,129 140 Updated Dec 24, 2025
Jupyter Notebook 17 1 Updated Aug 28, 2023

🚂 Python API for Emma's Markov Model Algorithms 🚂

Python 333 127 Updated Sep 11, 2023

Code for running RFdiffusion

Python 2,664 555 Updated Nov 20, 2025
Jupyter Notebook 5 1 Updated Jun 11, 2021