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Commits on Jun 4, 2026

• feat: add metadata_sources to create_empty_plate (#419)

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Commits on Jun 2, 2026

• feat: add zarr-python as an optional zarr implementation (default is zarrs-python) (#418)

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  srivarra

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Commits on May 29, 2026

• docs: torch DataLoader example with caveats (#417)

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  srivarra

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Commits on May 28, 2026

• feat(cli): add iohub compute-pyramid command (#412)

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  4 peopleauthored
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Commits on May 18, 2026

• feat: Added RFC-9 Zipped OME-Zarr (#408)

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  srivarra

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  afe11f6

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Commits on May 5, 2026

• feat: read Bioformats2raw (#414)

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  srivarra

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Commits on Apr 28, 2026

• refactor: add num_workers/use_threads to process_single_position (#410)

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  ieivanov

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  claude

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Commits on Apr 25, 2026

• Implement version-specific default chunk and shard sizes in iohub utils (#403)

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  ieivanov

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  claude

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  f281ac3

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Commits on Apr 24, 2026

• feat(tensorstore): expose recheck_cached_data on TensorStoreConfig (#406)

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  edyoshikun

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  claude

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Commits on Apr 23, 2026

• fix: rename zarr entry-point group for pyproject schema (#405)

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  ieivanov

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Commits on Apr 22, 2026

• Roll back converter default to ome-ngff 0.4 (#400)

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  ieivanov

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Commits on Apr 9, 2026

• fix: adding ome-zarr v0.4 back (#398)

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  srivarra

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  d674602

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Commits on Apr 7, 2026

• refactor: replace multiprocessing.Pool with ThreadPoolExecutor in process_single_position (#396)

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  aofei-liu

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  claude

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Commits on Apr 3, 2026

• fix: fix the chunking along Z (can handle prime numbers now) (#376)

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  srivarra

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  9beb2a4

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Commits on Apr 2, 2026

• ci: Adding CI / Mike for versioned docs (#395)

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  srivarra

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  481451e

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• feat: Added flexible backends with the Zarr(s)-Python and Tensorstore support. (#393)

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  srivarra

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  8f0c02c

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Commits on Mar 27, 2026

• Add NGFF Labels (#336)

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  srivarra

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  02b7525

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Commits on Mar 19, 2026

• feat: added dims to choose downsampling dimensions (#387)

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  srivarra

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  36bfd01

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• feat: removing _deprecated/ (#388)

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  srivarra

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  5f65248

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Commits on Feb 28, 2026

• pef: Lazy metadata access (#381)

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  srivarra

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  610d8a4

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• src layout and test warnings cleaned up (#380)

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  srivarra

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  3c47e29

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Commits on Feb 25, 2026

• docs: update docs to zensical (#378)

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  srivarra

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  6f16e41

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Commits on Feb 13, 2026

• Updated Sphinx-Polyversion (#356)

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  srivarra

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  f4bf0e4

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Commits on Feb 12, 2026

• Prevent data loss during YX to ZYX rechunking for conversion (#368)

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  srivarra

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Commits on Feb 10, 2026

• Add xarray integration to Position (#370)

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  talonchandler

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• fix: fixes globbing with ome ngff v0.5 (#372)

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  srivarra

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Commits on Feb 4, 2026

• build: migrate project tooling to uv, ruff and hatch (#365)

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  srivarra

  authored
  26b5e31

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Commits on Jan 24, 2026

• Added `Position.compute_pyramids` (#348)

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  srivarra

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  ieivanov

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  953da00

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Commits on Jan 8, 2026

• Don't let OME t_scale be equal to zero (#361)

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  ieivanov

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Commits on Jan 6, 2026

• Updated tifffile for Zarr V3 support (#360)

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  srivarra

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Commits on Dec 18, 2025

• Fix integer types during conversion (#358)

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  ieivanov

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  f5d7f7d

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Commits on Dec 3, 2025

• Bulk position creation (#350)

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  ivirshup

  and

  srivarra

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  74347a4

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Commits on Oct 29, 2025

• refactor parsing of hcs position labels into (row, col, fov) (#344)

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  ieivanov

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  srivarra

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Commits on Sep 25, 2025

• Merged `setup.cfg` and `setup.py` into the `pyproject.toml` (#337)

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  srivarra

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  56a8186

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Commits on Sep 22, 2025

• Advertise OME-NGFF v0.5 (#340)

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  srivarra

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  431d74b

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