Skip to content

Navigation Menu

Appearance settings

cbg-ethz

View all features
- BY COMPANY SIZE
  Enterprises
  Small and medium teams
  Startups
  Nonprofits
- BY USE CASE
  App Modernization
  DevSecOps
  DevOps
  CI/CD
  View all use cases
- BY INDUSTRY
  Healthcare
  Financial services
  Manufacturing
  Government
  View all industries
View all solutions
- EXPLORE BY TOPIC
  AI
  Software Development
  DevOps
  Security
  View all topics
- EXPLORE BY TYPE
  Customer stories
  Events & webinars
  Ebooks & reports
  Business insights
  GitHub Skills
- SUPPORT & SERVICES
  Documentation
  Customer support
  Community forum
  Trust center
  Partners
View all resources
- COMMUNITY
  GitHub SponsorsFund open source developers
- PROGRAMS
  Security Lab
  Maintainer Community
  Accelerator
  GitHub Stars
  Archive Program
- REPOSITORIES
  Topics
  Trending
  Collections
- ENTERPRISE SOLUTIONS
  Enterprise platformAI-powered developer platform
- AVAILABLE ADD-ONS
  GitHub Advanced SecurityEnterprise-grade security features
  Copilot for BusinessEnterprise-grade AI features
  Premium SupportEnterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

101 followers
Basel, Switzerland
https://www.bsse.ethz.ch/cbg
@cbg_ethz

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

Pinned Loading

V-pipe V-pipe Public

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Jupyter Notebook 146 46

Repositories

Loading

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All C C++ Java JavaScript Jupyter Notebook MATLAB Perl Python R Rust Shell

Sort

Select order

Last updated Name Stars

Showing 10 of 118 repositories

RSV-wastewater-2024-2025 Public
Computational analysis of wastewater-derived Respiratory Syncytial Virus (RSV) data collected during the 2024–2025 season in Switzerland.

cbg-ethz/RSV-wastewater-2024-2025’s past year of commit activity

Jupyter Notebook 0 Apache-2.0 0 0 0 Updated May 14, 2026
SCICoNE Public
Single-cell copy number calling and event history reconstruction.

cbg-ethz/SCICoNE’s past year of commit activity

C++ 28 GPL-3.0 11 8 (1 issue needs help) 0 Updated May 13, 2026
scDEF Public
Deep exponential families for single-cell data.

cbg-ethz/scDEF’s past year of commit activity

Python 20 1 0 0 Updated May 12, 2026
scReliability Public

cbg-ethz/scReliability’s past year of commit activity

0 0 0 0 Updated May 8, 2026
pangolin Public
BSSE COVID-19 sequencing of test swab samples

cbg-ethz/pangolin’s past year of commit activity

Shell 7 3 0 1 Updated May 8, 2026
scClone2DR Public
scClone2DR project

cbg-ethz/scClone2DR’s past year of commit activity

Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated May 6, 2026
mt-SCITE-benchmark Public
Perform a benchmark comparing mt-scite to scite and merlin.

cbg-ethz/mt-SCITE-benchmark’s past year of commit activity

Python 0 1 0 0 Updated May 1, 2026
v-pipe-scout Public
Rapid Viral Variant Exploration and Detection - Interactive WebApp

cbg-ethz/v-pipe-scout’s past year of commit activity

Python 0 MIT 0 7 3 Updated May 1, 2026
covvfit Public
Fitness estimates of SARS-CoV-2 variants

cbg-ethz/covvfit’s past year of commit activity

Python 3 MIT 1 3 7 Updated May 1, 2026
WisePulse Public
WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.

cbg-ethz/WisePulse’s past year of commit activity

Rust 5 MIT 0 35 2 Updated Apr 30, 2026

View all repositories

People

Top languages

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Footer

© 2026 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.