A flexible model for estimating thermal tolerance and sensitivity

Short scripts for converting genetic data between formats.

PhyloZoo: a Python package for working with phylogenetic networks and related evolutionary datatypes

Module for analysing admixture graphs

package to summarize features of a phylogenetic network, or features shared across a set of phylogenetic networks

Simulate a multispecies coalescent forward in time and make a plot

Julia package providing FileIO-compatible loading of phylogenetic tree and network data from various formats into arbitrary types of graph container types.

All of the scripts and initial data used in the simulation study to evaluate SNaQ.jl version 1.1 as well as the empirical study of swordtails and platyfishes (Xiphophorus: Poeciliidae).

A REPL-based AI coding copilot for Julia — connect to Anthropic Claude, OpenAI, Ollama, or any compatible API

Code implementation for "Neural Neighbor Join for Accurate Molecular Phylogenetic Inference"

Files for inference of 4-leaf 4-cycle phylogenetic networks from aligned DNA sequence data

Squirrel: a Python package for reconstructing level-1 phylogenetic networks from sequence alignments or four-leaved networks

PaNDA: a Python package for computing and maximizing phylogenetic diversity in phylogenetic networks

Quartet subsampling for inferring phylogenetic networks via sparse learning

Sketch phylogenetic trees and networks

shell tools for processing phylogenetic trees

High throughput tool for tall and wide multiple sequence alignment.

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

Fast likelihoods for time series from spectral densities

Spectral density estimation for irregularly sampled stationary processes

A Julia framework for developing phylogenetic models