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zmip Public
zoom-in pipeline: per-lineage re-embedding, foreign-lineage scoring and agent refinement of an msp annotation
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osp Public
Single-sample scRNA-seq QC → clustering/DEG → HTML report, with optional Claude-agent cell-type annotation
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msp Public
multi-sample-pipeline: harmony integration of osp per-sample outputs, cluster QC inspection and cell-type annotation agents, self-contained HTML report
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jianying-headless Public
Forked from mcncarl/jianying-headlessPrivate source preview: native Jianying drafts, isolated editing/export, and standalone Agent Skill.
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McCrystal Public
Legend of Mir 2 - Crystal client ported to macOS (MonoGame + SkiaSharp)
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agent-harness-bridge Public
Small compatibility layer giving OpenAI Agents SDK, Claude Agent SDK and DeepSeek Harness one submit-tool-oriented run_agent() API
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hyperqueue Public
Forked from It4innovations/hyperqueueUser-friendly Scheduler for sub-node tasks for HPC systems
Rust MIT License UpdatedSep 14, 2026 -
mercator Public
Put the north pole wherever you like, and draw the map that falls out — rotated-pole projections in a small Python script
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eca-grain Public
GRAIN: Guarded Rigor-Audited In-lineage Neighborhoods. One-pass, fully audited grains (metacell-style aggregates) from released ECA-RSI units
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d2r-notes Public
词计数的统计学:从一枚硬币到 Markov 链 — notes on word count statistics from i.i.d. to Markov (D2R)
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stanhue Public
Hierarchical auto-coloring for scatter plots with many categorical labels
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stangene Public
Gene identifier harmonization for single-cell transcriptomics datasets
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standissect-lite Public
Data-driven tiny-cluster detection inside existing single-cell clusters — the detection core of standissect, without the heavy stack.
Python MIT License UpdatedSep 3, 2026 -
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stancounts Public
Recover raw counts from log1p-normalized single-cell expression matrices
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mini-swe-agent Public
Forked from SWE-agent/mini-swe-agentThe 100 line AI agent that solves GitHub issues or helps you in your command line. Radically simple, no huge configs, no giant monorepo—but scores >74% on SWE-bench verified!
Python MIT License UpdatedAug 24, 2026 -
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decontx-scanpy Public
Scanpy-native Python port of DecontX (ambient RNA decontamination for scRNA-seq), validated to machine precision against the upstream Bioconductor kernels. PyPI: decontx-scanpy
Python Other UpdatedAug 23, 2026 -
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slurm-gpuview Public
Terminal dashboard for how busy a Slurm GPU partition really is — by GPU model and memory tier, excluding drained nodes and unclaimable GPUs
Shell MIT License UpdatedJul 31, 2026 -
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standissect Public
Cluster cleanup-diagnosis for single-cell data: UMAP-Leiden dissection, per-cluster DEG, canonical-core markers, minor-anatomy heatmaps, HTML report
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stanmetacols Public
Rank which AnnData .obs column identifies the sample each cell came from (LLM + offline heuristic)
Python MIT License UpdatedJul 3, 2026 -
sc-curation-pipeline Public
Dagster pipeline: watch a directory for new single-cell .h5ad files (one folder = one sample, .done marker) and run lightweight QC, surfaced as Dagster asset metadata + checks
Python UpdatedJun 23, 2026 -
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TorchGraphMAE Public
PyG (torch-geometric) port of GraphMAE2 — DGL→PyG migration
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