WDL Tasks for Bioinformatics tools

Standard tasks to run Bioinformatics tools using WDL

Make sure you use Cromwell version 35 and above

In your wdl workflows you can import directly like:

import "<url/to/raw/file.wdl" as ToolName

If you plan to contribute, make sure to activate our pre-commit hooks to validate changes to WDL by running:

make setup-githooks