App which provides an MCP server for integration of desktop with agents

OpenRAG is a comprehensive, single package Retrieval-Augmented Generation platform built on Langflow, Docling, and Opensearch.

An open source, modular, lightweight, and extensible RAG application stack, designed for anyone and everyone.

Spring MVC With Spring Boot (All Modules) and Project!!, by Packt Publishing

A browser-based implementation of Cytoscape for network visualization and analysis. Runs entirely in your browser with data-driven styling, collaborative workflows, and Cytoscape ecosystem integrat…

Query figures indexed by PubMed Central and collect metadata

Graph theory (network) library for visualisation and analysis

dropbox

Java SVG renderer

EnrichmentMap.org

The Dagre layout for DAGs and trees for Cytoscape.js

A Cytoscape Jupyter widget

Example implementation for CE component collection

Python library for calling Cytoscape Automation via CyREST

Network visualization webapp.

Cytoscape org web site.

A repo for the BAMStats command, used as the tutorial for Dockstore

Cytoscape plugin for creating small multiple views. Developed for gene expression data visualisation, but could be used for other purposes.

GeneMANIA helps you predict the function of your favourite genes and gene sets.

Smart Java Icon Loader with support of HiDPI (Retina) images

Darcula Look and Feel

Flash-based graph visualization tool which can be integrated in HTML via its Javascript API (http://cytoscapeweb.cytoscape.org).

Client-side JavaScript PDF generation for everyone.

A JavaScript graph library for analysis and visualisation (compatible with Node.js, jQuery 1.4+, and plain JavaScript)

WordCloud Cytoscape app