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1. DataHarmonizer DataHarmonizer Public

   A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by …

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2. LexMapr LexMapr Public

   LexMapr: A Lexicon and Rule-Based Tool for Translating Short Biomedical Specimen Descriptions into Semantic Web Ontology Terms

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3. VIRUS-MVP VIRUS-MVP Public

   VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact to study the spread and evolution of viruses in Canada and …

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4. bacpaq bacpaq Public

   Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data

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5. nf-ncov-voc nf-ncov-voc Public

   A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 or Mpox genomes. Workflow is developed in collaboration with VIRUS-MVP (https://github.com/cidgoh/VIRUS-MVP) which can…

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6. GRDI_AMR_One_Health GRDI_AMR_One_Health Public

   A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsh…

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