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CompareM2 Public
🦠🧬🧑💻📇 Microbial genomes-to-report pipeline
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holodoublevu Public
🪢👀 Generalization and parametrization of the supacow. Phase 1: Proteomics.
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedFeb 26, 2025 -
properomics Public
Link tendencies across multiple omics layers using principal components
GNU General Public License v3.0 UpdatedFeb 1, 2025 -
canhashydrogenaz Public
A simple tool that annotates common hydrogenases from (microbial) genomes.
GNU General Public License v3.0 UpdatedJan 11, 2025 -
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 3, 2025 -
distillR Public
Forked from anttonalberdi/distillRR package for distilling functional annotations of bacterial genomes and metagenomes
R UpdatedDec 16, 2024 -
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OmniCorr Public
Forked from shashank-KU/OmniCorrCalculate correlation between two omics data
R Other UpdatedSep 17, 2024 -
snakemake Public
Forked from snakemake/snakemakeThis is the development home of the workflow management system Snakemake. For general information, see
HTML MIT License UpdatedAug 13, 2024 -
cm2_benchmark Public
🏋️🧑⚖️ To test the performance and to compare to other tools.
Python UpdatedJul 12, 2024 -
gapseq Public
Forked from jotech/gapseqInformed prediction and analysis of bacterial metabolic pathways and genome-scale networks
R GNU General Public License v3.0 UpdatedMay 28, 2024 -
org-html-themes Public
Forked from fniessen/org-html-themesTransform your Org mode files into stunning HTML documents in minutes with our Org mode HTML theme. Elevate your productivity and impress your readers! #orgmode #html #theme #productivity #design
CSS GNU General Public License v3.0 UpdatedMay 19, 2024 -
mspipeline1 Public
🪆🦖 A snakemake wrapper around Nesvilab's FragPipe-CLI. In a perfect world, this pipeline was based on Sage.
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Bio326-NMBU-2023 Public archive
Forked from TheMEMOLab/Bio326-NMBU-2023BIO326 Genome sequencing; tools and analysis 2023
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mashtree Public
Forked from lskatz/mashtree🌳 Create a tree using Mash distances. Fork using skani for better distance estimation.
Perl GNU General Public License v3.0 UpdatedOct 24, 2023 -
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kofam_scan Public
Forked from takaram/kofam_scanCLI tool to annotate genes with KOfam
Ruby MIT License UpdatedJun 6, 2023 -
Kobelomics Public
Kobelomics - Customized bioinformatic pipelines for microbial multi-omics
UpdatedApr 29, 2023 -
snakemake_template Public template
A template to start out a snakemake project with
Python UpdatedMar 6, 2023 -
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conda_definitions Public
independent repo for use as submodule in repo snakemake_template
UpdatedFeb 8, 2023 -
profiles Public
profiles for use as independent submodule in repository snakemake_template
UpdatedFeb 8, 2023 -
FragPipe Public
Forked from Nesvilab/FragPipeA cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
Java Other UpdatedJan 23, 2023 -
slurm-utils Public
Forked from birc-aeh/slurm-utilsA few utilities for use on a SLURM cluster. Added some qnd logging.
Python MIT License UpdatedJan 12, 2023
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